Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50429

Metabolite ID
P50429
Deionized mass
405.2553 Da
Average m/z
406.2638
Average RT
26.9062
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
60
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

60 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.261e-13
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)1.247e-14
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)5.323e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.89e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)4.778e-11
Glyma.16G203300 hypothetical protein AT5G62230:ERL1:ERECTA-like 1 2Chr16:36437330–36445131 (+)1.175e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)2.76e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.261e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.548e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)1.282e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)5.233e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.714e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.714e-14
Glyma.01G170000 hypothetical protein AT4G36380:ROT3:Cytochrome P450 superfamily protein 1Chr01:50743009–50750309 (+)4.078e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)8.752e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.302e-12
Glyma.04G158400 hypothetical protein AT3G42660:AT3G42660:transducin family protein / WD-40 repeat family protein 1Chr04:38560905–38571145 (-)2.142e-12
Glyma.04G160700 hypothetical protein AT1G18610:AT1G18610:Galactose oxidase/kelch repeat superfamily protein 1Chr04:39818871–39825716 (+)2.142e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.473e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.135e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.559e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.559e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.559e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)2.194e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.077e-12
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)1.482e-13
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)1.482e-13
Glyma.09G056300 hypothetical protein NA 1Chr09:5059486–5068979 (+)2.504e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)4.812e-13
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)1.365e-13
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.404e-11
Glyma.09G069400 hypothetical protein NA 1Chr09:7055066–7058933 (+)4.31e-14
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.841e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.767e-17
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.976e-15
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.185e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.185e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.185e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.798e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.135e-11
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)1.937e-13
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)7.501e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)2.36e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.978e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.16e-11
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)1.778e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)5.462e-13
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)8.962e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)8.962e-11
Glyma.16G189500 hypothetical protein NA 1Chr16:35202920–35206459 (-)1.925e-12
Glyma.18G200500 hypothetical protein AT3G51860:CAX3:cation exchanger 3 1Chr18:48016361–48020799 (-)4.403e-13
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)5.006e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.702e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)3.853e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.76e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.077e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.077e-12
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)5.043e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.997e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)5.864e-11