Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50092

Metabolite ID
P50092
Deionized mass
150.1378 Da
Average m/z
151.1458
Average RT
26.7025
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
122
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

122 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 6Chr20:34757381–34771672 (+)1.607e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.054e-12
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)2.119e-13
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)9.602e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)4.145e-14
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 2Chr01:3821377–3825854 (-)2.119e-13
Glyma.01G173900 hypothetical protein NA 2Chr01:51092004–51094319 (+)8.573e-15
Glyma.01G174100 hypothetical protein NA 2Chr01:51102207–51104922 (+)3.197e-11
Glyma.02G188300 hypothetical protein NA 2Chr02:35008552–35027979 (-)4.805e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.521e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.521e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.521e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.48e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.054e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.945e-13
Glyma.20G104900 hypothetical protein NA 2Chr20:34706863–34713989 (-)1.607e-13
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)9.56e-11
Glyma.01G036300 hypothetical protein NA 1Chr01:3813757–3814433 (+)2.842e-11
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)3.71e-13
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)2.151e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)9.603e-12
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)1.242e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.729e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)4.849e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.584e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.584e-11
Glyma.01G172900 hypothetical protein NA 1Chr01:51020276–51025649 (-)2.983e-11
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)2.13e-13
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)2.13e-13
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)5.203e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.237e-11
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)4.708e-11
Glyma.04G062500 hypothetical protein NA 1Chr04:5158262–5163060 (-)8.081e-12
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)4.251e-15
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.231e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.072e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.4e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)6.032e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.007e-12
Glyma.08G116400 hypothetical protein NA 1Chr08:8947598–8949573 (-)1.514e-11
Glyma.08G116700 hypothetical protein NA 1Chr08:8997512–9003565 (+)4.891e-11
Glyma.08G180900 hypothetical protein AT5G64570:XYL4:beta-D-xylosidase 4__AT5G09730:BXL3:beta-xylosidase 3 1Chr08:14516542–14521137 (+)8.683e-12
Glyma.08G181500 hypothetical protein AT4G25980:AT4G25980:peroxidase superfamily protein 1Chr08:14566842–14570376 (-)5.932e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.639e-11
Glyma.08G211300 hypothetical protein AT1G52630:AT1G52630:O-fucosyltransferase family protein 1Chr08:17059736–17062962 (+)1.54e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.295e-11
Glyma.08G212600 hypothetical protein AT1G80120:AT1G80120:LURP-one-like protein (DUF567) 1Chr08:17146617–17147928 (-)4.351e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)6.597e-12
Glyma.09G011700 hypothetical protein NA 1Chr09:894858–897607 (-)6.92e-13
Glyma.09G012200 hypothetical protein AT2G35760:AT2G35760:Uncharacterized protein family (UPF0497) 1Chr09:937048–940244 (+)7.313e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)7.909e-15
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)6.212e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.775e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.242e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.521e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.521e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.521e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.521e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.521e-11
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)6.039e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)6.95e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)5.319e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)5.319e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)5.319e-11
Glyma.11G145100 hypothetical protein NA 1Chr11:11144477–11150703 (+)2.957e-12
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)4.319e-11
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)6.021e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)7.445e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)1.051e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)5.221e-11
Glyma.12G055100 hypothetical protein AT5G12900:AT5G12900:DNA double-strand break repair RAD50 ATPase 1Chr12:3988442–3991287 (-)1.505e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.086e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.086e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)4.601e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.887e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)5.887e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)5.887e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.018e-13
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.733e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.48e-11
Glyma.14G179900 hypothetical protein NA 1Chr14:44227886–44232217 (-)2.64e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)6.516e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.516e-12
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)4.069e-12
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)6.484e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.411e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.53e-17
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)4.492e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)4.28e-12
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)6.469e-11
Glyma.16G024600 hypothetical protein AT1G01320:AT1G01320:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:2374161–2391216 (-)1.204e-12
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)6.39e-14
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)4.777e-13
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)9.633e-11
Glyma.16G138500 hypothetical protein NA 1Chr16:29564872–29566190 (+)1.982e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)3.704e-13
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.455e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)5.859e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.467e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.467e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.019e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.019e-14
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)8.773e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)4.23e-12
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)8.044e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.204e-11
Glyma.20G094300 hypothetical protein NA 1Chr20:33753229–33754924 (-)1.772e-11
Glyma.20G094400 hypothetical protein AT5G02270:ABCI20:non-intrinsic ABC protein 9 1Chr20:33754119–33755970 (-)1.772e-11
Glyma.20G094500 hypothetical protein NA 1Chr20:33759417–33761555 (-)1.772e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)3.444e-11
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)5.447e-13
Glyma.20G105000 F-box/LRR-repeat protein 10 AT2G17020:AT2G17020:F-box/RNI-like superfamily protein 1Chr20:34726756–34729686 (+)7.365e-13
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)3.923e-12
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)1.644e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)5.242e-15
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)3.068e-11
Glyma.20G107600 hypothetical protein NA 1Chr20:35025241–35029762 (+)4.581e-11
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)7.005e-12
Glyma.20G107900 hypothetical protein NA 1Chr20:35044042–35046452 (-)8.557e-13
Glyma.20G108000 hypothetical protein NA 1Chr20:35047833–35051623 (-)1.231e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)1.397e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.548e-13