Overview Annotation GWAS Evidence Associated genes

P50052

Metabolite ID
P50052
Deionized mass
910.4374 Da
Average m/z
911.4474
Average RT
26.6916
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
148
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

148 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.427e-19
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 3Chr03:169480–172727 (+)3.12e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)7.969e-14
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)1.049e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)3.995e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)3.874e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 3Chr16:30652378–30659548 (+)3.543e-15
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.128e-12
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)5.102e-13
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)2.163e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)6.312e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.53e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.003e-16
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.003e-16
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)7.258e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)4.074e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.427e-19
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)9.367e-16
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)8.038e-13
Glyma.01G099100 hypothetical protein NA 1Chr01:33017228–33023840 (+)7.513e-11
Glyma.01G099600 hypothetical protein AT3G53930:AT3G53930:Protein kinase superfamily protein__AT2G37840:AT2G37840:Protein kinase superfamily protein 1Chr01:33115843–33125726 (-)7.513e-11
Glyma.01G099900 hypothetical protein NA 1Chr01:33275414–33282430 (+)7.513e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.184e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.185e-14
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)1.042e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.688e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.336e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.148e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.137e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.137e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.813e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.04e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.04e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.04e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)2.163e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.565e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.426e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.59e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.59e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.59e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.076e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.076e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)4.079e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)7.967e-14
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)7.969e-14
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.076e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)5.65e-11
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)5.421e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)7.323e-13
Glyma.09G012200 hypothetical protein AT2G35760:AT2G35760:Uncharacterized protein family (UPF0497) 1Chr09:937048–940244 (+)3.947e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)6.983e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.315e-11
Glyma.09G052400 hypothetical protein AT1G31040:AT1G31040:PLATZ transcription factor family protein 1Chr09:4583416–4589291 (-)7.114e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)8.28e-13
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)1.414e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)1.414e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)7.64e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)4.826e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)2.943e-13
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.695e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.376e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.858e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)8.075e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.27e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)8.685e-11
Glyma.11G126100 hypothetical protein AT1G08450:CRT3:calreticulin 3 1Chr11:9581659–9588340 (+)7.294e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)9.979e-15
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)9.979e-15
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)9.979e-15
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.801e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.801e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.566e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.566e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.507e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)5.151e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.53e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.254e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)7.351e-14
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)7.856e-16
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)7.856e-16
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.003e-16
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)6.69e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)5.846e-12
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)5.99e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.964e-11
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)3.014e-12
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)3.014e-12
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)1.456e-12
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)2.364e-13
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)1.112e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.242e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.025e-13
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)6.003e-16
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)1.39e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)4.999e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.063e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)1.846e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.671e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)3.874e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)3.874e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)7.446e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.777e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)1.861e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.554e-13
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.12e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.728e-15
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)4.051e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)5.535e-12
Glyma.16G143700 hypothetical protein AT3G50830:COR413-PM2:cold-regulated 413-plasma membrane 2 1Chr16:30388030–30390647 (-)8.367e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)8.208e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)1.089e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.543e-15
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)7.258e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.194e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.899e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)3.109e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)3.109e-11
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)8.652e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.917e-12
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)3.777e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)4.136e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)1.748e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.865e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.865e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)6.58e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)6.285e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)6.58e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)6.58e-11
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)3.592e-14
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)3.547e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)9.547e-13
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.265e-13
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)6.822e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.918e-17
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.918e-17
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)3.09e-11
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)1.204e-11
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)4.779e-11
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 1Chr19:38346007–38347425 (-)4.508e-11
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 1Chr19:38371477–38374357 (-)4.508e-11
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)4.508e-11
Glyma.19G126000 CYP98A2 cytochrome P450 98A2 AT2G40890:CYP98A3:cytochrome P450, family 98, subfamily A, polypeptide 3 1Chr19:38430097–38435201 (-)2.196e-12
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 1Chr19:38632803–38635633 (+)2.099e-11
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)1.811e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)1.033e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)5.246e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)8.997e-11
Glyma.20G112600 hypothetical protein AT5G04310:AT5G04310:Pectin lyase-like superfamily protein 1Chr20:35468911–35474203 (+)1.742e-11