Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49853

Metabolite ID
P49853
Deionized mass
173.9908 Da
Average m/z
174.9983
Average RT
26.4643
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
120
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

120 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G029800 hypothetical protein NA 5Chr19:3724518–3729860 (-)2.053e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.133e-12
Glyma.19G029600 hypothetical protein NA 4Chr19:3681517–3690884 (-)5.539e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)3.988e-16
Glyma.06G205100 hypothetical protein NA 2Chr06:19392099–19394901 (+)2.629e-11
Glyma.06G206000 hypothetical protein AT5G08110:AT5G08110:UBQ, helicase-c and DEAD-like helicase domain-containing protein 2Chr06:19693187–19711341 (-)3.275e-11
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)1.863e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.919e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.295e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.433e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.715e-14
Glyma.16G172500 hypothetical protein AT3G59140:ABCC10:multidrug resistance-associated protein 14 2Chr16:33322352–33330062 (+)8.493e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)9.406e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.133e-12
Glyma.19G118900 hypothetical protein NA 2Chr19:37651114–37657346 (+)3.781e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.173e-11
Glyma.02G253300 hypothetical protein NA 1Chr02:44063023–44065910 (-)9.367e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.211e-12
Glyma.03G022300 hypothetical protein AT3G60880:DHDPS1:dihydrodipicolinate synthase 1 1Chr03:2331191–2334210 (-)5.704e-12
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)5.675e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.466e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.467e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)8.017e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.292e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.106e-12
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)3.174e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.417e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.417e-15
Glyma.06G204200 hypothetical protein AT5G08050:AT5G08050:wiskott-aldrich syndrome family protein, putative (DUF1118) 1Chr06:19170925–19173352 (+)2.77e-12
Glyma.06G205000 hypothetical protein AT5G60940:AT5G60940:Transducin/WD40 repeat-like superfamily protein 1Chr06:19370642–19375687 (-)2.629e-11
Glyma.06G205800 AP1A agamous-like MADS-box AT5G60910:AGL8:AGAMOUS-like 8 1Chr06:19583729–19590906 (+)3.275e-11
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)4.936e-12
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)4.936e-12
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)4.936e-12
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)4.936e-12
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)4.936e-12
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)4.936e-12
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)4.936e-12
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)4.936e-12
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)4.936e-12
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)4.936e-12
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)4.245e-12
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)4.245e-12
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)4.245e-12
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)3.084e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)6.868e-14
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.028e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)6.868e-14
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)6.869e-14
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.028e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.211e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.552e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.059e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)9.069e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)9.069e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)4.784e-14
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)4.784e-14
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.023e-11
Glyma.09G167000 hypothetical protein NA 1Chr09:39103764–39109664 (-)2.32e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.483e-12
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)2.765e-11
Glyma.10G274200 hypothetical protein NA 1Chr10:49704427–49706416 (+)9.995e-11
Glyma.10G274300 COL22 AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein__AT1G68520:BBX14:B-box type zinc fing… 1Chr10:49716241–49718424 (-)9.995e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)6.702e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.778e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)5.286e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)5.287e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)5.287e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)5.286e-13
Glyma.11G171200 hypothetical protein AT5G58610:AT5G58610:PHD finger transcription factor 1Chr11:18475119–18484515 (+)7.626e-11
Glyma.11G171500 hypothetical protein NA 1Chr11:18629660–18631015 (+)7.626e-11
Glyma.11G171800 hypothetical protein NA 1Chr11:18663180–18666591 (-)7.626e-11
Glyma.11G172200 hypothetical protein AT1G07110:F2KP:fructose-2,6-bisphosphatase 1Chr11:18702580–18708310 (+)7.626e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.922e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.922e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.082e-11
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)3.761e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)2.77e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.77e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.824e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.823e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)9.824e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)9.824e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.677e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)4.864e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)8.074e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.715e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.037e-11
Glyma.15G150300 hypothetical protein AT5G49130:AT5G49130:MATE efflux family protein 1Chr15:12416065–12418420 (-)7.064e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)8.78e-12
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)2.153e-14
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.622e-11
Glyma.16G138800 hypothetical protein NA 1Chr16:29609432–29615000 (+)2.825e-12
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)2.574e-15
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.685e-14
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)9.15e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)2.149e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.592e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.377e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)7.766e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.007e-13
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.102e-11
Glyma.18G050100 hypothetical protein NA 1Chr18:4323734–4329696 (+)2.84e-13
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)7.737e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)5.253e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)7.737e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)7.737e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)4.648e-11
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)2.879e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.349e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.349e-14
Glyma.19G029500 hypothetical protein NA 1Chr19:3669589–3673886 (-)9.597e-12
Glyma.19G029900 hypothetical protein NA 1Chr19:3729213–3729434 (+)9.597e-12
Glyma.19G030100 hypothetical protein NA 1Chr19:3732644–3733945 (+)4.268e-12
Glyma.19G030500 GmAT133 NA 1Chr19:3779017–3781453 (-)4.268e-12
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)2.962e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)8.426e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)7.333e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.183e-14
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)4.742e-12