Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P49218

Metabolite ID
P49218
Deionized mass
293.2045 Da
Average m/z
294.2119
Average RT
25.9440
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
93
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

93 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)5.963e-12
Glyma.18G107900 hypothetical protein AT1G06490:CalS7:glucan synthase-like 7 3Chr18:12220182–12260477 (+)1.585e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)3.917e-16
Glyma.11G160600 hypothetical protein NA 2Chr11:14742674–14744647 (+)9.06e-11
Glyma.16G161500 hypothetical protein NA 2Chr16:32076715–32092322 (-)2.16e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)7.122e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)5.047e-12
Glyma.18G044900 hypothetical protein AT1G66120:AAE11:AMP-dependent synthetase and ligase family protein__AT1G68270:AT1G68270:AMP-dependent synthetase and li… 2Chr18:3881382–3884162 (+)3.407e-13
Glyma.18G046100 hypothetical protein NA 2Chr18:3982798–3989668 (-)1.15e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.627e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)2.084e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)2.262e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.434e-14
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.803e-12
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)8.702e-11
Glyma.04G190700 hypothetical protein NA 1Chr04:46143583–46146881 (+)2.995e-11
Glyma.04G190800 hypothetical protein AT5G07460:PMSR2:peptidemethionine sulfoxide reductase 2 1Chr04:46143080–46147709 (-)2.995e-11
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)5e-12
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)5e-12
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)5e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.71e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.079e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.171e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.171e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.036e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.211e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.211e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.211e-15
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.643e-15
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.83e-15
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)2.082e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.343e-13
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)9.381e-12
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)2.956e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)3.453e-11
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)5.963e-12
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)5.963e-12
Glyma.09G075500 hypothetical protein NA 1Chr09:8234794–8241097 (+)5.986e-11
Glyma.09G075600 hypothetical protein AT1G34630:AT1G34630:uncharacterized protein 1Chr09:8255346–8260648 (-)5.986e-11
Glyma.09G078300 hypothetical protein AT4G29400:AT4G29400:oxidoreductase/transition metal ion-binding protein (DUF3531) 1Chr09:8708840–8718819 (-)5.986e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.932e-17
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.38e-18
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.665e-16
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)1.582e-12
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)2.098e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)8.384e-11
Glyma.11G154900 PRP3 NA 1Chr11:12643089–12645488 (+)1.437e-13
Glyma.11G163300 WRKY19 WRKY transcription factor 19 NA 1Chr11:15312631–15316628 (+)3.943e-12
Glyma.11G182400 hypothetical protein NA 1Chr11:24988921–24993379 (+)1.774e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)2.533e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.307e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.307e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)8.001e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.394e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.069e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.069e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.069e-11
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)7.431e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.92e-11
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)1.972e-11
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)8.582e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.298e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.54e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.298e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.298e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.57e-16
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.347e-16
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)5.323e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)8.835e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.165e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.434e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.434e-11
Glyma.16G159100 hypothetical protein NA 1Chr16:31889835–31894662 (+)9.304e-11
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)1.914e-12
Glyma.17G145500 hypothetical protein AT4G17510:UCH3:ubiquitin C-terminal hydrolase 3 1Chr17:11947484–11955499 (-)1.883e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)4.076e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.185e-12
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)7.604e-12
Glyma.18G044400 hypothetical protein AT3G03250:UGP1:UDP-GLUCOSE PYROPHOSPHORYLASE 1 1Chr18:3836270–3837813 (+)7.219e-12
Glyma.18G044600 hypothetical protein AT4G10710:SPT16:global transcription factor C 1Chr18:3846050–3851668 (+)2.416e-12
Glyma.18G044700 hypothetical protein NA 1Chr18:3846777–3847566 (+)2.416e-12
Glyma.18G044800 hypothetical protein NA 1Chr18:3854125–3856926 (+)2.416e-12
Glyma.18G045000 hypothetical protein AT5G45130:RHA1:Ras small GTP-binding family protein 1Chr18:3889384–3895138 (-)3.863e-11
Glyma.18G045100 hypothetical protein AT1G65840:PAO4:polyamine oxidase 4 1Chr18:3897921–3904561 (-)3.863e-11
Glyma.18G045600 hypothetical protein NA 1Chr18:3947197–3952541 (+)6.852e-14
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)3.254e-13
Glyma.18G045800 hypothetical protein AT3G02710:AT3G02710:ARM repeat superfamily protein 1Chr18:3960056–3964823 (-)6.852e-14
Glyma.18G046000 hypothetical protein AT3G02720:DJ1D:Class I glutamine amidotransferase-like superfamily protein 1Chr18:3976764–3980543 (+)1.15e-11
Glyma.18G046600 hypothetical protein NA 1Chr18:4061751–4070033 (-)1.15e-11
Glyma.18G047000 hypothetical protein AT3G02700:AT3G02700:NC domain-containing protein-like protein 1Chr18:4118443–4120239 (+)1.15e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)1.055e-14
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)3.928e-11
Glyma.20G238100 hypothetical protein NA 1Chr20:46996011–47000167 (+)6.429e-11