Overview Annotation GWAS Evidence Associated genes

P49105

Metabolite ID
P49105
Deionized mass
542.3555 Da
Average m/z
543.3634
Average RT
25.8596
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
157
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

157 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)2.342e-16
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 3Chr03:2240686–2246512 (-)2.888e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.681e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 3Chr10:48805999–48811533 (-)3.828e-14
Glyma.14G211800 hypothetical protein AT1G66080:AT1G66080:hikeshi-like protein 3Chr14:47664851–47670630 (+)1.836e-13
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 2Chr07:6169729–6172231 (+)5.242e-12
Glyma.07G068600 hypothetical protein NA 2Chr07:6192764–6197166 (+)2.647e-12
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 2Chr07:6270176–6283087 (-)1.312e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.327e-20
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.377e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.015e-11
Glyma.14G212500 hypothetical protein AT3G02850:SKOR:STELAR K+ outward rectifier 2Chr14:47758067–47768578 (-)3.582e-11
Glyma.18G106600 hypothetical protein NA 2Chr18:11947553–11951868 (+)1.343e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)3.021e-15
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)3.97e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)4.258e-16
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)4.258e-16
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)8.397e-12
Glyma.01G017900 hypothetical protein NA 1Chr01:1734474–1735545 (+)2.014e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)3.611e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)7.6e-13
Glyma.02G273700 hypothetical protein AT5G21040:FBX2:F-box protein 2 1Chr02:45704557–45706919 (+)8.341e-11
Glyma.03G013500 hypothetical protein AT1G01700:ROPGEF2:RHO guanyl-nucleotide exchange factor 2 1Chr03:1370977–1375024 (+)1.112e-12
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)3.511e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)8.467e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)4.766e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 1Chr03:2202325–2234931 (+)3.155e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)4.351e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.668e-14
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)9.287e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.164e-12
Glyma.03G036800 TBP1 AT3G13445:TBP1:TATA binding protein 1 1Chr03:4472672–4477787 (-)2.761e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.796e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.104e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.674e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)6.925e-12
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)5.181e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.164e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.043e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.204e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.936e-12
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)8.607e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)1.914e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)4.373e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)4.373e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)4.373e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.84e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.487e-16
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.487e-16
Glyma.06G126300 hypothetical protein NA 1Chr06:10331312–10341252 (-)5.73e-12
Glyma.06G126400 hypothetical protein AT5G53150:AT5G53150:DnaJ heat shock amino-terminal domain protein 1Chr06:10356650–10362151 (-)2.221e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)4.996e-19
Glyma.06G126700 hypothetical protein AT5G53120:SPDS3:spermidine synthase 3 1Chr06:10384771–10389578 (-)5.532e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)9.65e-17
Glyma.06G129400 hypothetical protein AT5G24300:SS1:Glycogen/starch synthases, ADP-glucose type 1Chr06:10632042–10640023 (+)1.986e-13
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)1.824e-16
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)1.824e-16
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)7.528e-17
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)2.917e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.46e-11
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)1.412e-13
Glyma.06G285400 hypothetical protein AT1G06290:ACX3:acyl-CoA oxidase 3 1Chr06:47399250–47406151 (+)6.546e-12
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)4.582e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.68e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.681e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.47e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.982e-11
Glyma.07G067600 hypothetical protein NA 1Chr07:6091311–6093654 (-)2.084e-11
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)1.058e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)1.264e-11
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)2.647e-12
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)1.512e-12
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)1.512e-12
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)2.647e-12
Glyma.07G069600 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 1Chr07:6307073–6313498 (-)4.493e-11
Glyma.07G072700 hypothetical protein NA 1Chr07:6612725–6619961 (+)6.641e-11
Glyma.07G072900 hypothetical protein NA 1Chr07:6636336–6643709 (+)5.92e-11
Glyma.07G073100 hypothetical protein NA 1Chr07:6656839–6661250 (-)2.256e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)4.159e-13
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)4.159e-13
Glyma.07G075400 hypothetical protein NA 1Chr07:6849233–6853058 (+)3.005e-11
Glyma.07G078000 hypothetical protein NA 1Chr07:7121636–7126695 (+)1.488e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)8.657e-16
Glyma.07G078900 hypothetical protein AT3G61080:AT3G61080:Protein kinase superfamily protein 1Chr07:7187362–7192149 (+)9.75e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.376e-12
Glyma.07G093700 hypothetical protein AT3G18290:BTS:zinc finger protein-like protein 1Chr07:8723740–8734056 (-)5.228e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)3.971e-12
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)7.867e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.653e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)2.566e-11
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)8.924e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)7.796e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.368e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.033e-12
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)9.02e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.189e-12
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)4.895e-13
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)4.895e-13
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)4.993e-11
Glyma.10G257500 hypothetical protein NA 1Chr10:48386988–48389180 (-)4.276e-11
Glyma.10G264300 Mediator of RNA polymerase II transcription subunit 21 AT4G04780:MED21:mediator 21 1Chr10:48858818–48862498 (-)5.025e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)1.164e-13
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)9.565e-12
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)5.227e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.274e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)2.372e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)7.964e-13
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)3.861e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)6.653e-14
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.969e-13
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)3.46e-11
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)8.459e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)8.459e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)8.46e-11
Glyma.14G087900 hypothetical protein NA 1Chr14:7887761–7897469 (+)4.65e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)4.917e-12
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)4.917e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.833e-21
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.377e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.015e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)9.76e-11
Glyma.14G211900 hypothetical protein AT5G16560:KAN:Homeodomain-like superfamily protein 1Chr14:47690466–47697203 (+)2.365e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)6.387e-13
Glyma.15G021700 hypothetical protein NA 1Chr15:1669375–1690410 (+)4.829e-11
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)4.475e-11
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)4.475e-11
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)7.456e-11
Glyma.15G049800 hypothetical protein NA 1Chr15:3927843–3933656 (-)6.1e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.967e-15
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.941e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)9.656e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)9.656e-11
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)1.682e-12
Glyma.16G041800 hypothetical protein NA 1Chr16:3914214–3917387 (-)6.741e-15
Glyma.16G042100 hypothetical protein NA 1Chr16:3931670–3933390 (-)2.403e-12
Glyma.16G042200 hypothetical protein AT2G23840:AT2G23840:HNH endonuclease 1Chr16:3933842–3940818 (+)2.403e-12
Glyma.16G042600 hypothetical protein AT5G18230:AT5G18230:transcription regulator NOT2/NOT3/NOT5 family protein 1Chr16:3964264–3976083 (-)1.706e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)7.238e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)4.949e-12
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)1.83e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.121e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.436e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)4.043e-11
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)5.966e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)5.966e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)8.038e-11
Glyma.18G202100 hypothetical protein AT3G51850:CPK13:calcium-dependent protein kinase 13 1Chr18:48258271–48266554 (-)7.12e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)3.3e-13
Glyma.18G231300 hypothetical protein AT3G61310:AT3G61310:AT hook motif DNA-binding family protein 1Chr18:51979095–51987062 (-)9.45e-11
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)9.859e-12
Glyma.18G234900 hypothetical protein NA 1Chr18:52338841–52345036 (-)4.106e-11
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)1.214e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)9.815e-12
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)9.225e-13
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)9.225e-13
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)5.445e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)3.057e-11