Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48892

Metabolite ID
P48892
Deionized mass
94.0774 Da
Average m/z
95.0849
Average RT
25.7123
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
138
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

138 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.034e-14
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 3Chr03:2202325–2234931 (+)2.414e-14
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)8.463e-14
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 3Chr13:31727841–31735910 (-)3.327e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.042e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.042e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.042e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)7.513e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)2.85e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.192e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)4.855e-23
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.151e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.151e-13
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)5.656e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.875e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.034e-14
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2e-15
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)1.2e-11
Glyma.01G153300 hypothetical protein AT5G45340:CYP707A3:cytochrome P450, family 707, subfamily A, polypeptide 3__AT4G19230:CYP707A1:cytochrome P450, family … 1Chr01:49049375–49052359 (-)7.678e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)5.788e-11
Glyma.02G138200 hypothetical protein NA 1Chr02:14307786–14310106 (-)9.58e-13
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)2.079e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)5.644e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.611e-13
Glyma.03G002100 hypothetical protein AT5G01930:MAN6:Glycosyl hydrolase superfamily protein 1Chr03:211934–216522 (+)2.631e-13
Glyma.03G002400 hypothetical protein AT5G25780:EIF3B-2:eukaryotic translation initiation factor 3B-2 1Chr03:234217–238375 (-)2.631e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.238e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)9.698e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)3.389e-12
Glyma.04G234900 hypothetical protein AT5G53000:TAP46:2A phosphatase associated protein of 46 kD 1Chr04:50332008–50336222 (-)7.718e-11
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)6.228e-13
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)6.228e-13
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)6.228e-13
Glyma.05G029900 hypothetical protein AT5G62730:AT5G62730:Major facilitator superfamily protein 1Chr05:2565716–2569741 (-)7.955e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.236e-11
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)4.362e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.582e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.167e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.167e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.621e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.675e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.675e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.675e-12
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)3.774e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)2.682e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.047e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.587e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)3.154e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)3.796e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.102e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.102e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)5.867e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)8.463e-14
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)8.463e-14
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)1.223e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)8.758e-13
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)1.187e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)1.187e-11
Glyma.07G080900 hypothetical protein NA 1Chr07:7381339–7405785 (+)4.841e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.178e-14
Glyma.08G199700 hypothetical protein AT5G50340:AT5G50340:DNA repair protein RadA-like protein 1Chr08:16130591–16137703 (+)7.108e-11
Glyma.08G199800 hypothetical protein NA 1Chr08:16137933–16142956 (-)7.108e-11
Glyma.08G199900 hypothetical protein AT3G16480:MPPalpha:mitochondrial processing peptidase alpha subunit 1Chr08:16146033–16151741 (+)7.108e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)6.333e-12
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)6.333e-12
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)3.127e-14
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.994e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.23e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.133e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.188e-14
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)1.22e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)1.777e-13
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)8.361e-12
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)3.291e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)3.829e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.042e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.042e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.042e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)4.597e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.042e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.042e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.567e-11
Glyma.09G281400 hypothetical protein AT3G18620:AT3G18620:DHHC-type zinc finger family protein 1Chr09:49668985–49676216 (-)8.029e-11
Glyma.09G281700 hypothetical protein NA 1Chr09:49705303–49733182 (-)8.029e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)2.302e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)7.173e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.159e-18
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.159e-18
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.254e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.254e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.244e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.532e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.855e-23
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.437e-19
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)2.141e-17
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.498e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.857e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.857e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.151e-13
Glyma.13G136500 hypothetical protein NA 1Chr13:24910198–24916336 (-)8.11e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)9.502e-18
Glyma.13G156200 hypothetical protein AT1G80710:DRS1:DROUGHT SENSITIVE 1 1Chr13:27115515–27118951 (+)2.121e-12
Glyma.13G163400 hypothetical protein AT5G20350:TIP1:Ankyrin repeat family protein with DHHC zinc finger domain-containing protein 1Chr13:27861309–27869162 (+)3.771e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)4.738e-14
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)3.327e-13
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)7.556e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)3.327e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.359e-16
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)4.465e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)8.78e-11
Glyma.15G036000 hypothetical protein NA 1Chr15:2855429–2860689 (+)7.722e-11
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)2.095e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.058e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.539e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.939e-11
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)5.722e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.324e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.473e-13
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)1.736e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)1.171e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.324e-13
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)8.35e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.324e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)8.001e-13
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)2.3e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)5.065e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)6.639e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)5.656e-13
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)6e-13
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)5.656e-13
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)7.302e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)7.472e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.875e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)1.9e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.425e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.425e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)8.069e-12
Glyma.20G219100 hypothetical protein AT3G02830:ZFN1:zinc finger protein 1 1Chr20:45490419–45496014 (+)2.939e-11