Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48323

Metabolite ID
P48323
Deionized mass
521.3420 Da
Average m/z
522.3497
Average RT
25.2032
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
141
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

141 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.692e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.841e-15
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 3Chr03:169480–172727 (+)2.134e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.085e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)1.422e-12
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)1.199e-13
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)3.108e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)1.064e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.795e-12
Glyma.16G111100 hypothetical protein NA 2Chr16:24438458–24444801 (+)1.692e-13
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)9.889e-15
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)1.531e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.841e-15
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.836e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)3.126e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.854e-13
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.024e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.399e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)5.588e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.013e-13
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)8.282e-15
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.571e-15
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)4.385e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.714e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)6.04e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.513e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.352e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.919e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.323e-14
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.053e-18
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.053e-18
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.053e-18
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.614e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.614e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)5.457e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.247e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.084e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.247e-13
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.247e-13
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.084e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)5.919e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)3.639e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)6.012e-12
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)8.527e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)8.527e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)4.425e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.333e-12
Glyma.08G148700 hypothetical protein NA 1Chr08:11384601–11387727 (-)5.806e-11
Glyma.08G184300 hypothetical protein NA 1Chr08:14784345–14786953 (+)1.9e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)9.727e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.809e-11
Glyma.09G019400 hypothetical protein AT1G55270:AT1G55270:Galactose oxidase/kelch repeat superfamily protein 1Chr09:1518046–1520807 (+)4.689e-13
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)6.659e-13
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)2.963e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.692e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.256e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.27e-11
Glyma.09G148600 hypothetical protein AT5G51890:AT5G51890:Peroxidase superfamily protein 1Chr09:36761818–36764607 (+)1.038e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.286e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.765e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.765e-11
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)5.848e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.765e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.765e-11
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)7.177e-11
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)7.177e-11
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)7.177e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.687e-11
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)3.288e-13
Glyma.10G082200 hypothetical protein NA 1Chr10:9967027–9970045 (-)7.662e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.799e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.799e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.68e-11
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)1.57e-14
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)1.22e-13
Glyma.12G236500 hypothetical protein NA 1Chr12:39528803–39534614 (-)5.958e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)2.064e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.064e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.575e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.575e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.575e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.575e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)9.808e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)9.808e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)9.808e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.522e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.705e-13
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)3.273e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.568e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.977e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.795e-12
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)1.032e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)1.032e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.576e-17
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.025e-16
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.577e-17
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.576e-17
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.107e-12
Glyma.15G124200 hypothetical protein AT1G50500:HIT1:Membrane trafficking VPS53 family protein 1Chr15:9861709–9873220 (+)5.267e-11
Glyma.15G124300 hypothetical protein NA 1Chr15:9875069–9875810 (+)5.267e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.597e-14
Glyma.16G055000 hypothetical protein NA 1Chr16:5411241–5413143 (-)5.194e-11
Glyma.16G057500 hypothetical protein NA 1Chr16:5631176–5634867 (-)4.566e-11
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)7.955e-11
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.394e-12
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 1Chr16:24720965–24731678 (-)7.955e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.085e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.085e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.085e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.085e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)2.535e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.056e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.649e-13
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)9.083e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)7.945e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)9.069e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)1e-12
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)1.59e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)1.531e-12
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.94e-12
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)1.531e-12
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)5.639e-11
Glyma.18G227400 hypothetical protein AT2G45720:AT2G45720:ARM repeat superfamily protein 1Chr18:51650951–51654636 (-)2.4e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)3.913e-12
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)1.937e-12
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)7.638e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)3.824e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.665e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.665e-11
Glyma.19G052900 hypothetical protein NA 1Chr19:8583097–8583963 (+)3.882e-11
Glyma.19G053000 hypothetical protein NA 1Chr19:8595506–8596004 (+)3.882e-11
Glyma.19G053200 hypothetical protein AT5G45910:AT5G45910:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr19:8614188–8615729 (-)3.882e-11
Glyma.19G057000 hypothetical protein NA 1Chr19:10403335–10404974 (-)3.882e-11
Glyma.19G060900 hypothetical protein NA 1Chr19:12184420–12191004 (+)3.882e-11
Glyma.19G062200 hypothetical protein NA 1Chr19:13057166–13057974 (-)3.882e-11
Glyma.19G066600 hypothetical protein NA 1Chr19:18168108–18174666 (+)3.882e-11
Glyma.19G066800 hypothetical protein AT5G53430:SDG29:SET domain group 29 1Chr19:18371538–18401257 (+)3.882e-11
Glyma.19G070700 hypothetical protein AT1G70790:AT1G70790:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr19:23598719–23603130 (+)3.882e-11
Glyma.19G073200 hypothetical protein AT1G25390:AT1G25390:Protein kinase superfamily protein 1Chr19:26248452–26264052 (+)3.882e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)4.785e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)8.392e-11