Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P48136

Metabolite ID
P48136
Deionized mass
262.1896 Da
Average m/z
263.1964
Average RT
25.1007
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 6Chr20:34757381–34771672 (+)8.897e-13
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)2.557e-13
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)6.793e-11
Glyma.01G172900 hypothetical protein NA 2Chr01:51020276–51025649 (-)4.73e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)1.972e-14
Glyma.08G122500 hypothetical protein NA 2Chr08:9441329–9445315 (-)4.47e-11
Glyma.19G005300 hypothetical protein NA 2Chr19:483800–486940 (+)3.224e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.795e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)2.275e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)2.56e-11
Glyma.01G171900 hypothetical protein AT5G66460:MAN7:Glycosyl hydrolase superfamily protein 1Chr01:50912520–50915454 (-)4.73e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)4.244e-14
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)3.286e-13
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)3.286e-13
Glyma.01G176400 hypothetical protein AT1G63810:AT1G63810:nucleolar protein 1Chr01:51285599–51295173 (-)3.462e-12
Glyma.03G202700 hypothetical protein AT5G16280:AT5G16280:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr03:41108071–41128352 (+)1.312e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.262e-14
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)1.406e-13
Glyma.04G062500 hypothetical protein NA 1Chr04:5158262–5163060 (-)9.676e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)3.765e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)2.502e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.831e-14
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)1.554e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)1.554e-11
Glyma.08G116400 hypothetical protein NA 1Chr08:8947598–8949573 (-)4.275e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.47e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.47e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.47e-11
Glyma.08G180900 hypothetical protein AT5G64570:XYL4:beta-D-xylosidase 4__AT5G09730:BXL3:beta-xylosidase 3 1Chr08:14516542–14521137 (+)6.657e-12
Glyma.08G181500 hypothetical protein AT4G25980:AT4G25980:peroxidase superfamily protein 1Chr08:14566842–14570376 (-)6.391e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.25e-15
Glyma.08G211300 hypothetical protein AT1G52630:AT1G52630:O-fucosyltransferase family protein 1Chr08:17059736–17062962 (+)1.175e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.017e-13
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)6.793e-11
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)6.793e-11
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)5.725e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)3.996e-14
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.967e-13
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)1.109e-14
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)6.524e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.239e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)7.53e-13
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)3.423e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)4.493e-12
Glyma.13G049200 hypothetical protein AT3G02440:TBL20:TRICHOME BIREFRINGENCE-LIKE 20 1Chr13:14515169–14519326 (-)8.583e-11
Glyma.13G049400 hypothetical protein AT2G20000:HBT:CDC27 family protein 1Chr13:14530308–14541307 (-)8.583e-11
Glyma.13G319600 hypothetical protein AT5G22740:CSLA02:cellulose synthase-like A02 1Chr13:41398196–41403950 (-)1.197e-13
Glyma.13G319700 hypothetical protein NA 1Chr13:41414504–41418957 (+)9.522e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.308e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.826e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.826e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)6.887e-13
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)3.109e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.055e-13
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)7.607e-11
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)7.882e-13
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)6.842e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)5.14e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)5.577e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)4.461e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.295e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)7.728e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)7.728e-12
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)5.539e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)6.196e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.938e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.938e-13
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)5.5e-12
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)4.15e-11
Glyma.20G018000 hypothetical protein AT1G70820:AT1G70820:phosphoglucomutase, putative / glucose phosphomutase 1Chr20:1840259–1844405 (-)6.441e-11
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)1.524e-13
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)1.458e-12
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)8.897e-13
Glyma.20G105000 F-box/LRR-repeat protein 10 AT2G17020:AT2G17020:F-box/RNI-like superfamily protein 1Chr20:34726756–34729686 (+)4.927e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)3.066e-13
Glyma.20G107900 hypothetical protein NA 1Chr20:35044042–35046452 (-)4.313e-11
Glyma.20G108000 hypothetical protein NA 1Chr20:35047833–35051623 (-)6.509e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)5.925e-12