Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P47930

Metabolite ID
P47930
Deionized mass
847.6377 Da
Average m/z
848.6450
Average RT
24.9883
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
156
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

156 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)8.658e-16
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)1.919e-12
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)6.908e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.255e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)4.569e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)6.256e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.049e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)2.384e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 2Chr06:49315918–49324382 (+)1.25e-12
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)5.07e-12
Glyma.08G338900 hypothetical protein NA 2Chr08:45536950–45543029 (-)1.061e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.607e-12
Glyma.16G111100 hypothetical protein NA 2Chr16:24438458–24444801 (+)8.658e-16
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 2Chr16:24720965–24731678 (-)2.239e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)8.96e-12
Glyma.18G057500 hypothetical protein AT2G30170:PBCP:Protein phosphatase 2C family protein 2Chr18:5080060–5083756 (-)1.587e-11
Glyma.18G057900 hypothetical protein NA 2Chr18:5092695–5097651 (-)1.587e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.255e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)7.611e-13
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)3.433e-11
Glyma.02G061700 hypothetical protein AT2G23450:AT2G23450:Protein kinase superfamily protein 1Chr02:5577271–5582873 (-)3.191e-11
Glyma.02G176800 hypothetical protein AT5G06839:TGA10:bZIP transcription factor family protein 1Chr02:29019977–29028838 (-)7.268e-11
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)2.079e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)7.984e-19
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)1.732e-12
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)1.717e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.559e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.374e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.501e-15
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.421e-11
Glyma.04G176600 hypothetical protein AT1G74800:AT1G74800:Galactosyltransferase family protein 1Chr04:43967842–43971631 (-)3.3e-11
Glyma.04G190900 hypothetical protein AT5G63160:BT1:BTB and TAZ domain protein 1__AT3G48360:BT2:BTB and TAZ domain protein 2 1Chr04:46152356–46155245 (-)2.995e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.232e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.124e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.124e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.791e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.1e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.1e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.1e-13
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.303e-17
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)1.69e-14
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.095e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.529e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)4.142e-12
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)8.301e-15
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)1.172e-14
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)1.172e-14
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)1.172e-14
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)1.172e-14
Glyma.05G233700 COL11 zinc finger protein CONSTANS-LIKE 16-like AT1G68520:BBX14:B-box type zinc finger protein with CCT domain-containing protein 1Chr05:41087671–41089500 (+)1.021e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.062e-19
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.519e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.701e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.773e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.773e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)5.631e-12
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)8.993e-11
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)5.169e-11
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)5.169e-11
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)5.17e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)1.25e-12
Glyma.06G307900 hypothetical protein NA 1Chr06:49664901–49674729 (+)7.124e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)9.795e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)1.023e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.068e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.361e-13
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)2.488e-12
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.763e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.244e-14
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.386e-12
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)1.115e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)1.115e-11
Glyma.08G338200 hypothetical protein NA 1Chr08:45509289–45511145 (+)4.811e-11
Glyma.08G338600 hypothetical protein NA 1Chr08:45522321–45523727 (-)4.811e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.068e-11
Glyma.09G053800 hypothetical protein NA 1Chr09:4737413–4755632 (-)5.303e-11
Glyma.09G056900 hypothetical protein NA 1Chr09:5128829–5132737 (+)9.077e-11
Glyma.09G057000 hypothetical protein NA 1Chr09:5140625–5145658 (+)9.077e-11
Glyma.09G057300 hypothetical protein AT5G57330:AT5G57330:Galactose mutarotase-like superfamily protein 1Chr09:5164998–5171598 (-)1.647e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)6.42e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.873e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.164e-13
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)3.901e-13
Glyma.09G187600 hypothetical protein AT5G19460:NUDT20:nudix hydrolase homolog 20 1Chr09:41213588–41217191 (+)3.243e-12
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)2.311e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)3.065e-12
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)6.447e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)9.264e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)5.35e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)5.907e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.152e-14
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.152e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.152e-14
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.152e-14
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.638e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.509e-14
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)1.086e-12
Glyma.10G238300 hypothetical protein AT5G07240:IQD24:IQ-domain 24 1Chr10:46688122–46693051 (-)7.159e-11
Glyma.10G238700 hypothetical protein NA 1Chr10:46721439–46725173 (+)7.159e-11
Glyma.10G239000 hypothetical protein NA 1Chr10:46755702–46757579 (-)7.159e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)1.079e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)8.537e-12
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)1.645e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.38e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.38e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.375e-15
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.375e-15
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.409e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.409e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)8.101e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.711e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.711e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)9.997e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)8.238e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)8.238e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)8.238e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)3.63e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.637e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.026e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.344e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.026e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.026e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.418e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.389e-17
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)3.417e-11
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)1.501e-11
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.146e-14
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)4.569e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)4.569e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)4.569e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)4.569e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)3.282e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)1.79e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.524e-14
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.049e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.049e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.319e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.153e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.783e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)4.562e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)9.716e-15
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)9.684e-15
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.592e-14
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)2.191e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)8.366e-14
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)9.253e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)9.253e-11
Glyma.17G118900 hypothetical protein NA 1Chr17:9401882–9402864 (+)4.219e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)2.384e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)7.741e-13
Glyma.18G057600 hypothetical protein AT1G07020:AT1G07020:uncharacterized protein 1Chr18:5084210–5084791 (+)1.587e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)2.741e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.434e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.434e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)6.297e-14
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)3.521e-12