Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P47482

Metabolite ID
P47482
Deionized mass
886.3626 Da
Average m/z
887.3705
Average RT
24.7816
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
75
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

75 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)4.178e-12
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)7.572e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.594e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)6.498e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)2.65e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)6.322e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)2.644e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)1.823e-15
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)4.481e-16
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)3.03e-16
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)2.951e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.149e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.149e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)3.825e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.594e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)6.794e-15
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)5.179e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)7.274e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.57e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)1.075e-15
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)2.297e-15
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)4.584e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)3.409e-15
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)3.409e-15
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)3.409e-15
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)9.453e-12
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)8.245e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)3.393e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)2.134e-13
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)2.134e-13
Glyma.07G014300 hypothetical protein NA 1Chr07:1115661–1120213 (-)2.326e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.448e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)7.03e-19
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)2.108e-12
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)2.108e-12
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)8.741e-15
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)1.383e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)1.383e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)6.66e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.121e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)4.036e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.203e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.203e-14
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)1.677e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.649e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.649e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.299e-17
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.03e-16
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)6.771e-14
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)9.19e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.951e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.344e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.344e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.149e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.825e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.748e-11
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)1.325e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)4.178e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)2.669e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)6.498e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)6.498e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)6.498e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)6.498e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.309e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)6.322e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)6.322e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.721e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)9.064e-14
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)3.619e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)3.863e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)8.868e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.868e-12
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)7.035e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)4.06e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)1.238e-11