Overview Annotation GWAS Evidence Associated genes

P47397

Metabolite ID
P47397
Deionized mass
271.1624 Da
Average m/z
272.1709
Average RT
24.7196
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
147
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

147 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)5.3e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)1.331e-15
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)2.264e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.775e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 3Chr13:31727841–31735910 (-)7.002e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)4.459e-11
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)1.643e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 2Chr02:7553127–7557516 (-)1.996e-14
Glyma.03G022900 hypothetical protein NA 2Chr03:2409690–2420328 (-)5.865e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)9.549e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)2.351e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.131e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)2.261e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)7.235e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)3.339e-11
Glyma.13G198600 hypothetical protein AT3G07940:AT3G07940:Calcium-dependent ARF-type GTPase activating protein family 2Chr13:31233913–31240731 (-)3.603e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 2Chr13:31720004–31725252 (+)7.002e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)9.249e-12
Glyma.14G171400 hypothetical protein NA 2Chr14:42398866–42404627 (+)9.028e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.008e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)3.493e-11
Glyma.01G016500 hypothetical protein AT4G25960:ABCB2:P-glycoprotein 2 1Chr01:1573790–1583422 (+)2.743e-11
Glyma.01G018000 hypothetical protein NA 1Chr01:1736217–1737749 (-)9.25e-12
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)9.739e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.929e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)1.097e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)7.636e-14
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)7.167e-13
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)7.431e-13
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)7.431e-13
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)7.431e-13
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)7.431e-13
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)7.431e-13
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)7.431e-13
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)7.431e-13
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)1.643e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)3.111e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)5.299e-14
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)5.416e-15
Glyma.03G022500 hypothetical protein NA 1Chr03:2339702–2345448 (+)1.144e-11
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)8.968e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)6.178e-13
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)4.523e-13
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)5.128e-11
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)5.128e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)4.485e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)6.563e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)4.689e-15
Glyma.04G084600 hypothetical protein NA 1Chr04:7171949–7173688 (+)8.497e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)3.515e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)1.114e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.216e-15
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.567e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.603e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.603e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.182e-15
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.311e-17
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.311e-17
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.311e-17
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)1.299e-11
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)7.846e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)3.004e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)6.222e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)3.66e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)3.66e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)3.66e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)3.66e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.098e-20
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.822e-33
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.96e-17
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)3.386e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.459e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.459e-15
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)4.564e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)1.063e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.774e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.774e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.056e-12
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)9.962e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)8.623e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.306e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.131e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.131e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.131e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.131e-13
Glyma.08G150400 hypothetical protein NA 1Chr08:11565265–11571675 (+)4.777e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)4.064e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)4.064e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)4.802e-16
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.536e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.655e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.655e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.857e-16
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.857e-16
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)5.889e-11
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)2.63e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.882e-16
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.882e-16
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.438e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)3.244e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.235e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.13e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)3.206e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.339e-11
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)6.914e-12
Glyma.13G198800 hypothetical protein NA 1Chr13:31252110–31257733 (-)3.603e-13
Glyma.13G199800 hypothetical protein NA 1Chr13:31353786–31356378 (+)7.747e-12
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)3.198e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)7.002e-12
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)2.491e-16
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.034e-11
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)6.532e-11
Glyma.14G083200 hypothetical protein NA 1Chr14:7249145–7256947 (-)1.14e-12
Glyma.14G084200 hypothetical protein NA 1Chr14:7375402–7379417 (-)4.479e-14
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.258e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)9.249e-12
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)9.028e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.855e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.317e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.855e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.855e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.682e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.999e-14
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)2.009e-11
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)5.004e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)5.3e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)8.359e-11
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)2.757e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)4.459e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.635e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.635e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.283e-15
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.283e-15
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)6.433e-11
Glyma.18G220200 hypothetical protein AT2G38650:GAUT7:galacturonosyltransferase 7 1Chr18:50714270–50723555 (-)8.993e-15
Glyma.18G220300 hypothetical protein NA 1Chr18:50719690–50720509 (-)8.993e-15
Glyma.18G220800 hypothetical protein NA 1Chr18:50782488–50785467 (+)1.146e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.421e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.421e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)8.593e-11
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)8.15e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.973e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)3.677e-11
Glyma.20G217700 hypothetical protein AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein 1Chr20:45347424–45357977 (-)5.846e-11
Glyma.20G219100 hypothetical protein AT3G02830:ZFN1:zinc finger protein 1 1Chr20:45490419–45496014 (+)5.889e-11
Glyma.20G220900 GER12 germin-like protein AT5G39110:AT5G39110:RmlC-like cupins superfamily protein__AT5G39160:AT5G39160:RmlC-like cupins superfamily protein__AT5… 1Chr20:45587617–45588678 (+)1.086e-11
Glyma.20G221200 hypothetical protein NA 1Chr20:45616970–45619607 (-)1.086e-11