Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P47211

Metabolite ID
P47211
Deionized mass
567.2412 Da
Average m/z
568.2503
Average RT
24.6241
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
112
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

112 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 6Chr20:34757381–34771672 (+)3.474e-13
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.796e-11
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.88e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 4Chr20:34984922–34988496 (+)1.151e-15
Glyma.08G122200 hypothetical protein NA 3Chr08:9416766–9429995 (-)1.803e-14
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)1.803e-14
Glyma.08G122600 hypothetical protein NA 2Chr08:9445153–9450502 (+)9.064e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.106e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.106e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.106e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.891e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.222e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)5.691e-17
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.88e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.241e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)5.245e-12
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 2Chr20:34151918–34155417 (+)3.52e-16
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)4.99e-12
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)8.61e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)8.462e-11
Glyma.03G204100 hypothetical protein AT2G35890:CPK25:calcium-dependent protein kinase 25 1Chr03:41232349–41236699 (+)4.037e-11
Glyma.03G204300 hypothetical protein AT3G52370:FLA15:FASCICLIN-like arabinogalactan protein 15__AT2G35860:FLA16:FASCICLIN-like arabinogalactan protein 16 1Chr03:41250882–41253833 (-)1.325e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.739e-16
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)9.274e-11
Glyma.04G220400 hypothetical protein AT5G10020:AT5G10020:Leucine-rich receptor-like protein kinase family protein 1Chr04:49102263–49108229 (+)5.099e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.783e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.783e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.783e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)4.533e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.787e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.65e-13
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)9.126e-12
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)1.933e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)1.933e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)1.933e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)1.933e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.095e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.157e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)2.106e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.189e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.929e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)3.945e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)1.096e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.803e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.803e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.803e-14
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)3.056e-15
Glyma.08G209800 hypothetical protein AT3G15650:AT3G15650:alpha/beta-Hydrolases superfamily protein 1Chr08:16991275–16995651 (+)5.701e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)3.748e-14
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)3.748e-14
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)4.632e-18
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)1.135e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.812e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)1.491e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)3.532e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.106e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.106e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.106e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.316e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.106e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.106e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)6.854e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)5.236e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.976e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.976e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.976e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.976e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.839e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.338e-13
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.152e-12
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)8.563e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.075e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.076e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)4.091e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)3.805e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)3.805e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)8.305e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.222e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.691e-17
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)1.473e-13
Glyma.14G202400 hypothetical protein AT1G21480:AT1G21480:Exostosin family protein 1Chr14:46768802–46772377 (+)5.365e-12
Glyma.14G202500 hypothetical protein NA 1Chr14:46773824–46775761 (+)5.365e-12
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)4.603e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.13e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.306e-11
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)2.126e-13
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.796e-11
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)6.223e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.681e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)8.039e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.875e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.893e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.893e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.231e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.231e-12
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)8.69e-11
Glyma.18G240100 hypothetical protein AT5G16510:RGP5:Alpha-1,4-glucan-protein synthase family protein 1Chr18:52884598–52887433 (-)6.814e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.06e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.059e-11
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)1.442e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)6.192e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.075e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)4.82e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.468e-11
Glyma.20G098200 hypothetical protein AT1G56345:AT1G56345:Pseudouridine synthase family protein 1Chr20:34140611–34141832 (+)3.791e-13
Glyma.20G098500 hypothetical protein AT2G39470:PnsL1:PsbP-like protein 2 1Chr20:34179794–34183432 (-)1.071e-12
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)3.474e-13
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)7.12e-16
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)7.985e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)1.316e-15
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)4.154e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)9.51e-12