Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46818

Metabolite ID
P46818
Deionized mass
354.1490 Da
Average m/z
709.3068
Average RT
24.3367
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
104
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

104 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 6Chr20:34757381–34771672 (+)2.322e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.865e-15
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.812e-12
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)3.134e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.151e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.459e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)5.068e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.655e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.655e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)8.227e-16
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)2.912e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)5.093e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.865e-15
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.033e-14
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)3.048e-12
Glyma.03G202700 hypothetical protein AT5G16280:AT5G16280:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr03:41108071–41128352 (+)5.347e-11
Glyma.03G204300 hypothetical protein AT3G52370:FLA15:FASCICLIN-like arabinogalactan protein 15__AT2G35860:FLA16:FASCICLIN-like arabinogalactan protein 16 1Chr03:41250882–41253833 (-)3.065e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.46e-19
Glyma.03G223000 hypothetical protein AT1G02500:SAM1:S-adenosylmethionine synthetase 1 1Chr03:42579900–42582675 (+)1.131e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.256e-15
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.737e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.066e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)9.19e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)9.19e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.095e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.997e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.997e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.997e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)9.496e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.674e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.959e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.858e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.295e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.929e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.723e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.723e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)5.023e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.813e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.813e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.929e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)8.354e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)3.602e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.151e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.151e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.151e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.151e-13
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.101e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)5.319e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)5.319e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.863e-17
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)3.134e-11
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)3.134e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)4.661e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.071e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.646e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.349e-12
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)1.078e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.956e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.956e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.956e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.956e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.085e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.586e-14
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)3.587e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.206e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.685e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.685e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.068e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.44e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)8.991e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.395e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.395e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.655e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)3.602e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)3.081e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.378e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.718e-11
Glyma.14G191400 hypothetical protein NA 1Chr14:45610980–45612600 (+)2.204e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)7.962e-11
Glyma.15G158100 hypothetical protein AT5G62270:GCD1:ribosomal protein L20 1Chr15:13241421–13247242 (-)4.575e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)5.368e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.539e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.431e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.427e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.427e-12
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)3.263e-15
Glyma.17G005800 hypothetical protein AT1G48050:KU80:Ku80 family protein 1Chr17:538812–544067 (-)6.659e-11
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)3.263e-15
Glyma.17G006100 hypothetical protein AT4G16370:OPT3:oligopeptide transporter 1Chr17:556272–560601 (-)6.659e-11
Glyma.17G007400 hypothetical protein NA 1Chr17:630066–634738 (-)6.565e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)4.216e-11
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)8.82e-11
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)8.819e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.178e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.178e-13
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)3.651e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)1.522e-11
Glyma.20G022500 hypothetical protein NA 1Chr20:2342943–2353164 (+)1.492e-12
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)2.322e-12
Glyma.20G105000 F-box/LRR-repeat protein 10 AT2G17020:AT2G17020:F-box/RNI-like superfamily protein 1Chr20:34726756–34729686 (+)9.994e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.893e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)7.162e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)5.424e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.781e-11