Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P46179

Metabolite ID
P46179
Deionized mass
464.2157 Da
Average m/z
465.2219
Average RT
23.7945
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
118
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

118 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.484e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.159e-11
Glyma.02G200700 hypothetical protein AT3G11560:AT3G11560:LETM1-like protein__AT5G06220:AT5G06220:LETM1-like protein 2Chr02:38435454–38459254 (-)1.268e-11
Glyma.04G129500 hypothetical protein AT3G21060:RBL:Transducin/WD40 repeat-like superfamily protein 2Chr04:18096368–18109438 (+)8.879e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)4.004e-16
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)4.841e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.841e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.576e-17
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.511e-12
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 2Chr14:46291986–46298337 (+)7.574e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)9.387e-17
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)2.421e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)1.344e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.484e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)9.027e-11
Glyma.02G200600 hypothetical protein AT3G11570:TBL8:TRICHOME BIREFRINGENCE-LIKE 8__AT5G06230:TBL9:TRICHOME BIREFRINGENCE-LIKE 9 1Chr02:38432334–38436063 (+)1.268e-11
Glyma.02G201100 hypothetical protein AT5G06200:CASP4:Uncharacterized protein family (UPF0497) 1Chr02:38497390–38499369 (-)1.268e-11
Glyma.02G201400 hypothetical protein AT5G06140:SNX1:sorting nexin 1 1Chr02:38539394–38547251 (+)1.268e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.851e-16
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.949e-14
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)3.204e-12
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)6.2e-11
Glyma.04G062500 hypothetical protein NA 1Chr04:5158262–5163060 (-)2.216e-12
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)3.033e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.797e-13
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.306e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)1.821e-11
Glyma.04G129600 hypothetical protein NA 1Chr04:18110585–18112762 (+)8.879e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.494e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)9.106e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)3.049e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)8.2e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.256e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.967e-18
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.1e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.1e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.1e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)1.136e-14
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)1.136e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.66e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.66e-14
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)4.063e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)6.368e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)4.063e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)4.063e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)6.368e-12
Glyma.06G293600 hypothetical protein AT1G03650:AT1G03650:Acyl-CoA N-acyltransferases (NAT) superfamily protein 1Chr06:48251255–48252791 (+)8.856e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.159e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.159e-11
Glyma.06G307900 hypothetical protein NA 1Chr06:49664901–49674729 (+)1.89e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)8.452e-12
Glyma.07G078000 hypothetical protein NA 1Chr07:7121636–7126695 (+)2.011e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.857e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.236e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)1.236e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.209e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.22e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)5.975e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.52e-14
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.52e-14
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.52e-14
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)2.816e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)7.192e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.996e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.996e-11
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)2.944e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.397e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.841e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.204e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)3.818e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)6.463e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)3.92e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)3.92e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)3.92e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.525e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.479e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.557e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)4.454e-14
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)4.454e-14
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.511e-12
Glyma.14G197800 hypothetical protein AT2G30120:AT2G30120:protein FLC EXPRESSOR 1Chr14:46303686–46308920 (+)4.463e-11
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)7.574e-13
Glyma.14G198800 hypothetical protein AT1G07030:AT1G07030:Mitochondrial substrate carrier family protein 1Chr14:46375963–46379746 (-)1.048e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)9.387e-17
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)9.104e-14
Glyma.14G202400 hypothetical protein AT1G21480:AT1G21480:Exostosin family protein 1Chr14:46768802–46772377 (+)1.557e-12
Glyma.14G202500 hypothetical protein NA 1Chr14:46773824–46775761 (+)1.557e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)9.761e-16
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)1.026e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)1.026e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.931e-19
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.738e-16
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)8.56e-12
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)2.778e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)2.615e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.421e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.176e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.062e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.909e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.095e-12
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)7.525e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.608e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.833e-11
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)2.908e-11
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)2.908e-11
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)2.908e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.482e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.482e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)6.413e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.289e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.281e-12
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)2.868e-12
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)1.423e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)3.69e-14
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.695e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)2.118e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)7.762e-11
Glyma.20G217100 hypothetical protein AT1G64640:ENODL8:early nodulin-like protein 8 1Chr20:45278452–45280126 (-)2.483e-13