Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P45656

Metabolite ID
P45656
Deionized mass
630.2840 Da
Average m/z
631.2925
Average RT
23.4836
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
117
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

117 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G105300 hypothetical protein AT4G38470:STY46:ACT-like protein tyrosine kinase family protein 6Chr20:34757381–34771672 (+)1.417e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)8.654e-13
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.177e-12
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)3.111e-11
Glyma.13G224800 hypothetical protein NA 3Chr13:33748627–33756494 (-)3.295e-13
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.307e-11
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)3.688e-18
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 2Chr08:9054060–9063297 (+)2.285e-13
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)3.773e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.813e-11
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)2.913e-12
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)2.913e-12
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)2.015e-16
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)6.255e-20
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)7.351e-17
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)2.833e-21
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)5.549e-20
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)2.704e-20
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)2.704e-20
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)2.704e-20
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)2.704e-20
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)2.704e-20
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)2.704e-20
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)2.704e-20
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)3.688e-18
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)1.438e-16
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)5.532e-12
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)3.903e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.998e-14
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)5.302e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.143e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.739e-11
Glyma.04G084600 hypothetical protein NA 1Chr04:7171949–7173688 (+)8.885e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)4.486e-11
Glyma.05G219800 TRE1 trehalase 1 AT4G24040:TRE1:trehalase 1 1Chr05:39920183–39925215 (+)1.095e-12
Glyma.05G220100 hypothetical protein AT1G33170:AT1G33170:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:39950499–39956022 (+)1.095e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.797e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.387e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.267e-25
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.636e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.636e-12
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)6.734e-12
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)9.53e-12
Glyma.07G093800 hypothetical protein NA 1Chr07:8755633–8760962 (+)5.001e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.471e-11
Glyma.08G113900 hypothetical protein AT3G13560:AT3G13560:O-Glycosyl hydrolases family 17 protein 1Chr08:8730526–8734718 (-)1.45e-12
Glyma.08G114000 hypothetical protein AT5G46430:AT5G46430:Ribosomal protein L32e 1Chr08:8737686–8739958 (+)3.166e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)6.26e-12
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)7.634e-12
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)1.647e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)4.216e-12
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)1.536e-12
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)3.773e-15
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)3.028e-12
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 1Chr08:9169843–9172229 (-)1.724e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.655e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.813e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.813e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.813e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.813e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)1.525e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.857e-11
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)3.111e-11
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)3.111e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.986e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)9.499e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.649e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.649e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.649e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.649e-12
Glyma.10G261100 hypothetical protein NA 1Chr10:48628245–48635184 (+)2.927e-11
Glyma.11G183200 hypothetical protein AT2G27500:AT2G27500:Glycosyl hydrolase superfamily protein 1Chr11:25070908–25075185 (-)8.145e-12
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)3.048e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.427e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.427e-11
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)1.722e-14
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)4.486e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)4.486e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)4.486e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.108e-11
Glyma.13G224300 hypothetical protein NA 1Chr13:33703380–33715996 (-)7.31e-13
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)3.295e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.221e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)7.067e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)7.492e-17
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)9.597e-13
Glyma.16G058000 hypothetical protein AT5G15750:AT5G15750:Alpha-L RNA-binding motif/Ribosomal protein S4 family protein 1Chr16:5674056–5677758 (+)3.808e-11
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)7.503e-14
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)8.654e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)2.074e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)4.77e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.175e-15
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)1.058e-13
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)3.127e-12
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)3.23e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)5.141e-11
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)9.12e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)6.905e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.968e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.307e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.07e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.07e-13
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)3.57e-11
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)3.57e-11
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)3.57e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)2.133e-11
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)7.458e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)2.38e-13
Glyma.18G265500 hypothetical protein AT5G39250:AT5G39250:F-box family protein 1Chr18:55019514–55022070 (-)1.583e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)3.569e-13
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)1.859e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)4.077e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)6.958e-11
Glyma.19G188200 hypothetical protein NA 1Chr19:44647446–44649620 (-)7.573e-14
Glyma.20G104900 hypothetical protein NA 1Chr20:34706863–34713989 (-)1.417e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)8.134e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)3.827e-11