Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P45405

Metabolite ID
P45405
Deionized mass
162.0554 Da
Average m/z
163.0611
Average RT
23.3491
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
139
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

139 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)6.119e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.1e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)3.441e-20
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)5.34e-12
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)9.346e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.589e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)6.474e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)6.474e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)6.474e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.85e-11
Glyma.16G111100 hypothetical protein NA 2Chr16:24438458–24444801 (+)6.119e-13
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)8.885e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.1e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)9.17e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)5.033e-11
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)2.482e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)3.085e-11
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)3.431e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)6.204e-13
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)8.556e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)3.87e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.222e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.405e-12
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)1.311e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)3.331e-11
Glyma.03G041900 hypothetical protein NA 1Chr03:5313339–5315847 (-)4.079e-11
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)8.294e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.41e-11
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)9.227e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)6.247e-14
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)8.442e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)3.156e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)4.532e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)8.297e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)8.014e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.09e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.983e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.983e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.508e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.864e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.864e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.864e-15
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)4.181e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.251e-11
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)1.658e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.898e-18
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.369e-30
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.172e-20
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)8.687e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)8.687e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.21e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.21e-14
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)8.27e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.189e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)5.885e-12
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)7.321e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.026e-14
Glyma.08G116400 hypothetical protein NA 1Chr08:8947598–8949573 (-)1.569e-12
Glyma.08G116700 hypothetical protein NA 1Chr08:8997512–9003565 (+)8.796e-12
Glyma.08G116800 hypothetical protein AT1G29240:AT1G29240:transcription initiation factor TFIID subunit, putative (DUF688) 1Chr08:9006479–9010442 (-)2.233e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.89e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.359e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.359e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.359e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.359e-11
Glyma.08G140900 hypothetical protein AT5G64940:ATH13:ABC2 homolog 13 1Chr08:10760962–10769630 (-)7.037e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)3.939e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.618e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)5.803e-14
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)2.745e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.355e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.453e-14
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)1.508e-12
Glyma.09G270000 hypothetical protein AT3G54220:SCR:GRAS family transcription factor 1Chr09:48704737–48708820 (-)9.22e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)2.177e-15
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)8.77e-14
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.17e-13
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)6.474e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)6.474e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)6.474e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)6.474e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)6.474e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)4.723e-11
Glyma.10G037300 hypothetical protein AT3G54670:TTN8:Structural maintenance of chromosomes (SMC) family protein 1Chr10:3270545–3283318 (-)9.854e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.107e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.107e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.107e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.107e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)1.713e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)4.653e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.296e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.296e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.175e-11
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)7.669e-11
Glyma.13G044300 hypothetical protein NA 1Chr13:13774555–13779250 (-)1.553e-12
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)7.35e-13
Glyma.13G049200 hypothetical protein AT3G02440:TBL20:TRICHOME BIREFRINGENCE-LIKE 20 1Chr13:14515169–14519326 (-)3.348e-11
Glyma.13G049400 hypothetical protein AT2G20000:HBT:CDC27 family protein 1Chr13:14530308–14541307 (-)3.348e-11
Glyma.13G052800 hypothetical protein NA 1Chr13:15005141–15009623 (+)5.395e-13
Glyma.13G053300 hypothetical protein NA 1Chr13:15064460–15069264 (-)1.211e-11
Glyma.13G319600 hypothetical protein AT5G22740:CSLA02:cellulose synthase-like A02 1Chr13:41398196–41403950 (-)2.829e-12
Glyma.13G319700 hypothetical protein NA 1Chr13:41414504–41418957 (+)5.42e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.2e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.614e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.016e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.614e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.614e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.346e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.18e-13
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)5.844e-13
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)1.396e-12
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)6.945e-11
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)4.943e-12
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 1Chr16:24720965–24731678 (-)6.945e-11
Glyma.16G114900 hypothetical protein NA 1Chr16:25456379–25485759 (+)7.101e-11
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)2.67e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.843e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.33e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.433e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.751e-11
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)3.002e-13
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)7.323e-15
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)3.842e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.217e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)6.79e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)6.79e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)5.489e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)5.489e-14
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.101e-11
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)4.084e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)3.241e-13
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)2.622e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)2.402e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.225e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.225e-13
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)4.211e-12
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)2.159e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.551e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)7.247e-12