Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P44259

Metabolite ID
P44259
Deionized mass
277.6299 Da
Average m/z
278.6362
Average RT
22.5109
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
71
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

71 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G147300 hypothetical protein NA 2Chr08:11238871–11242682 (+)7.989e-12
Glyma.11G132500 hypothetical protein AT3G20870:AT3G20870:ZIP metal ion transporter family 2Chr11:10140512–10144780 (+)5.605e-13
Glyma.11G133900 hypothetical protein NA 2Chr11:10234884–10240762 (+)9.873e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 2Chr12:36390283–36394245 (-)5.05e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.915e-16
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)5.018e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)2.825e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)9.438e-11
Glyma.01G180100 hypothetical protein AT2G23740:SUVR5:histone-lysine N-methyltransferase SUVR5 1Chr01:51632164–51646354 (-)7.663e-12
Glyma.02G044200 hypothetical protein AT5G66060:AT5G66060:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 1Chr02:4100131–4105208 (+)1.004e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)1.313e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.937e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)9.725e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.137e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.499e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.499e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.499e-11
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)1.8e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.411e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.411e-15
Glyma.06G161200 hypothetical protein AT5G23580:CDPK9:calmodulin-like domain protein kinase 9 1Chr06:13326951–13331701 (+)6.768e-12
Glyma.06G291300 hypothetical protein NA 1Chr06:48016841–48019943 (+)8.837e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)3.529e-16
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.349e-14
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)3.529e-16
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)3.529e-16
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.349e-14
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)2.587e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.599e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.076e-12
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)1.026e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)1.026e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.109e-11
Glyma.08G107800 AK-HSDH aspartokinase-homoserine dehydrogenase AT4G19710:AK-HSDH II:aspartate kinase-homoserine dehydrogenase ii 1Chr08:8296196–8307328 (-)2.432e-12
Glyma.08G108400 hypothetical protein NA 1Chr08:8326311–8330206 (+)2.432e-12
Glyma.08G146100 hypothetical protein NA 1Chr08:11119305–11124078 (+)6.422e-11
Glyma.08G147200 hypothetical protein AT3G18710:PUB29:plant U-box 29__AT5G64660:CMPG2:CYS, MET, PRO, and GLY protein 2 1Chr08:11225587–11227445 (+)5.245e-11
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)5.045e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)2.968e-11
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)4.028e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.032e-11
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)2.289e-11
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)1.31e-11
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)1.31e-11
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)1.31e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.957e-11
Glyma.11G132300 hypothetical protein NA 1Chr11:10134578–10138512 (-)5.37e-12
Glyma.11G132700 hypothetical protein NA 1Chr11:10160457–10165565 (+)5.608e-13
Glyma.11G132900 hypothetical protein NA 1Chr11:10175214–10176574 (+)5.605e-13
Glyma.11G133200 hypothetical protein NA 1Chr11:10183497–10187695 (+)1.862e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.535e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.535e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.905e-12
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)4.117e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.017e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.825e-14
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.872e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.825e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)4.232e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.737e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.888e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)9.438e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.289e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.703e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)8.197e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)9.686e-11
Glyma.20G179600 hypothetical protein AT2G39220:PLP6:PATATIN-like protein 6__AT3G54950:pPLAIIIbeta:patatin-like protein 6 1Chr20:41714740–41719977 (-)7.93e-11
Glyma.20G196800 hypothetical protein AT5G07475:AT5G07475:Cupredoxin superfamily protein 1Chr20:43457446–43458717 (+)2.427e-11
Glyma.20G198200 hypothetical protein AT1G10580:AT1G10580:Transducin/WD40 repeat-like superfamily protein 1Chr20:43555484–43560206 (+)2.427e-11
Glyma.20G198400 hypothetical protein NA 1Chr20:43601702–43633244 (+)3.757e-13
Glyma.20G198600 hypothetical protein AT5G51150:AT5G51150:Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 1Chr20:43634710–43639892 (-)3.757e-13