Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P43372

Metabolite ID
P43372
Deionized mass
760.9345 Da
Average m/z
761.9450
Average RT
22.0068
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
129
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

129 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)5.073e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.543e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)3.158e-14
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)9.08e-12
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)7.98e-13
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.524e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)7.445e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.542e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)6.238e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)6.239e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)6.238e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)5.939e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.073e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.073e-13
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)5.609e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)4.018e-14
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 2Chr16:30652378–30659548 (+)3.155e-14
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)9.124e-13
Glyma.01G038800 hypothetical protein NA 1Chr01:4162465–4166783 (-)8.052e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)5.412e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)7.409e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)7.409e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)5.516e-11
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)3.42e-12
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)6.05e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.89e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)1.908e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)9.678e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)3.215e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.094e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.799e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)2.462e-13
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)4.531e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)9.926e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.751e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.751e-14
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)2.793e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.926e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.925e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)8.135e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)8.135e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)5.073e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)5.073e-12
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)7.398e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)7.398e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)8.171e-12
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)4.177e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.542e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.542e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.542e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.542e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)2.446e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)2.446e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.526e-12
Glyma.08G338200 hypothetical protein NA 1Chr08:45509289–45511145 (+)2.071e-11
Glyma.08G338600 hypothetical protein NA 1Chr08:45522321–45523727 (-)2.071e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)2.071e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.416e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.413e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.413e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)5.984e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)6.239e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)6.239e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)6.239e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)6.238e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)6.238e-11
Glyma.09G281400 hypothetical protein AT3G18620:AT3G18620:DHHC-type zinc finger family protein 1Chr09:49668985–49676216 (-)3.697e-11
Glyma.09G281700 hypothetical protein NA 1Chr09:49705303–49733182 (-)3.697e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)1.31e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.961e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.961e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.073e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.073e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.415e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.415e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)4.128e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.929e-15
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.268e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.268e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.073e-13
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)2.847e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.847e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.129e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.235e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.129e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.129e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.325e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.137e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)5.609e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)3.542e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)7.149e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.543e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.543e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.543e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.543e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)8.929e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)8.948e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)5.072e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)9.081e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)9.08e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.223e-13
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)8.548e-12
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)1.11e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)3.841e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.155e-14
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)4.08e-14
Glyma.16G145300 hypothetical protein AT2G35780:scpl26:serine carboxypeptidase-like 26__AT3G07990:SCPL27:serine carboxypeptidase-like 27 1Chr16:30604586–30608656 (+)6.951e-13
Glyma.16G145400 hypothetical protein AT3G12090:TET6:tetraspanin6 1Chr16:30624348–30627475 (+)2.646e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)2.512e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)2.512e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)3.95e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.483e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)6.725e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)1.171e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.356e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.524e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.917e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.917e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)5.599e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)5.599e-14
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)1.458e-11
Glyma.18G009100 hypothetical protein AT1G67620:AT1G67620:Lojap-related protein 1Chr18:662847–665921 (+)4.013e-11
Glyma.18G009200 hypothetical protein NA 1Chr18:667359–671598 (+)4.013e-11
Glyma.18G266200 hypothetical protein NA 1Chr18:55065716–55066843 (-)1.301e-12
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)5.212e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.48e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.69e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.69e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)5.615e-11