Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42759

Metabolite ID
P42759
Deionized mass
110.0355 Da
Average m/z
111.0433
Average RT
21.6100
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
133
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

133 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.518e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)8.32e-14
Glyma.15G192700 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 3Chr15:21029024–21058079 (-)7.964e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)5.744e-12
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 2Chr03:44064511–44073939 (+)2.457e-12
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)1.368e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)6.727e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.654e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.36e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.936e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.936e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.592e-11
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)1.193e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 2Chr18:51943730–51947645 (+)3.615e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.518e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.235e-11
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)8.073e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)7.478e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.303e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.656e-14
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.908e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)6.995e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)7.581e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.108e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.336e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)6.336e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.619e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.388e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.388e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.388e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.971e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.272e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.989e-13
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)5.872e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)9.257e-15
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)9.257e-15
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)9.257e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.2e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.2e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)6.442e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)7.43e-11
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)4.907e-11
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)4.907e-11
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)4.907e-11
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)4.907e-11
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)4.907e-11
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)4.907e-11
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)4.907e-11
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)4.907e-11
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)4.907e-11
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)4.907e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.501e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)2.063e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)2.063e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)2.67e-12
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)2.123e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)1.447e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)2.908e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)3.346e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)3.346e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)4.153e-13
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)6.212e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)3.787e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.34e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)1.864e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)8.055e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.689e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.983e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)2.535e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)1.033e-11
Glyma.11G037100 hypothetical protein AT2G35660:CTF2A:FAD/NAD(P)-binding oxidoreductase family protein 1Chr11:2678678–2681764 (-)2.074e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.645e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.667e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.667e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.667e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.667e-11
Glyma.11G058500 hypothetical protein AT4G37190:AT4G37190:plasma membrane, autoregulation-binding site, misato segment II, myosin-like, tubulin/FtsZ protein 1Chr11:4417029–4423791 (-)6.982e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.892e-15
Glyma.11G239000 hypothetical protein AT5G10120:AT5G10120:Ethylene insensitive 3 family protein 1Chr11:33337797–33339122 (-)5.569e-13
Glyma.12G098000 hypothetical protein NA 1Chr12:8432078–8439545 (+)6.554e-11
Glyma.12G098300 hypothetical protein NA 1Chr12:8458112–8459817 (+)6.554e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.141e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.141e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.655e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.655e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.966e-12
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)1.367e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.22e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.36e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.047e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.802e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)8.32e-14
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.788e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.351e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.351e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.936e-14
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.448e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.527e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.592e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)3.637e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)6.083e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)4.628e-13
Glyma.15G192400 hypothetical protein AT5G49150:GEX2:gamete expressed 2 1Chr15:20964449–20974340 (+)7.964e-11
Glyma.15G192900 hypothetical protein NA 1Chr15:21108370–21110353 (+)7.964e-11
Glyma.15G233600 hypothetical protein NA 1Chr15:43971478–43972713 (+)2.19e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)1.331e-12
Glyma.16G014200 hypothetical protein AT5G12370:SEC10:exocyst complex component sec10 1Chr16:1243163–1253803 (-)3.273e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.744e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.744e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.744e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.744e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)3.217e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)9.99e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.249e-14
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.13e-15
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.591e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)6.695e-11
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)1.159e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)7.986e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)6.966e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)6.966e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)9.649e-14
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)6.124e-14
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.696e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.324e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.324e-12
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)9.197e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)9.757e-12
Glyma.19G188200 hypothetical protein NA 1Chr19:44647446–44649620 (-)1.193e-13
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.587e-14
Glyma.19G247800 hypothetical protein NA 1Chr19:49385792–49388122 (-)1.967e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.764e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.333e-11