Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42713

Metabolite ID
P42713
Deionized mass
224.0681 Da
Average m/z
225.0741
Average RT
21.5982
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
120
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

120 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.549e-13
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)3.727e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 2Chr03:44064511–44073939 (+)8.485e-12
Glyma.03G251100 hypothetical protein AT3G04490:AT3G04490:exportin-4 protein 2Chr03:44673965–44702804 (-)1.482e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.646e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.79e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)4.513e-14
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)1.21e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.549e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.041e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)7.444e-11
Glyma.02G294000 hypothetical protein NA 1Chr02:47237993–47240495 (+)7.387e-12
Glyma.02G294200 hypothetical protein AT3G20290:EHD1:EPS15 homology domain 1 1Chr02:47256480–47263517 (+)1.738e-12
Glyma.02G294500 hypothetical protein AT5G50850:MAB1:Transketolase family protein 1Chr02:47272683–47277831 (-)6.258e-12
Glyma.02G294900 hypothetical protein AT5G55220:AT5G55220:trigger factor type chaperone family protein 1Chr02:47300149–47306133 (+)7.7e-13
Glyma.02G295000 hypothetical protein AT4G26770:AT4G26770:Phosphatidate cytidylyltransferase family protein 1Chr02:47306160–47312036 (-)7.7e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.331e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)5.881e-11
Glyma.03G250400 hypothetical protein AT3G04470:AT3G04470:Ankyrin repeat family protein 1Chr03:44616824–44621636 (-)3.475e-12
Glyma.03G252800 hypothetical protein AT5G18430:AT5G18430:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr03:44849419–44851672 (+)2.039e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.542e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)1.044e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.317e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.148e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.449e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.449e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.275e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.35e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.35e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.35e-13
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)8.718e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.647e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.35e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.841e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.362e-15
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.362e-15
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.362e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.747e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.747e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)3.51e-11
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)6.124e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)4.875e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)5.341e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)5.341e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.583e-14
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)6.831e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)7.334e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)5.207e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.457e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.718e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.229e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.208e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.889e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.889e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.889e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.889e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.341e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.229e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)2.622e-13
Glyma.10G264300 Mediator of RNA polymerase II transcription subunit 21 AT4G04780:MED21:mediator 21 1Chr10:48858818–48862498 (-)4.755e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)3.017e-14
Glyma.10G266400 hypothetical protein NA 1Chr10:48984735–48993690 (+)3.089e-12
Glyma.11G037100 hypothetical protein AT2G35660:CTF2A:FAD/NAD(P)-binding oxidoreductase family protein 1Chr11:2678678–2681764 (-)4.476e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)6.954e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.983e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.983e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.983e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.983e-11
Glyma.11G058500 hypothetical protein AT4G37190:AT4G37190:plasma membrane, autoregulation-binding site, misato segment II, myosin-like, tubulin/FtsZ protein 1Chr11:4417029–4423791 (-)3.338e-12
Glyma.11G061000 hypothetical protein AT4G37210:AT4G37210:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr11:4576441–4579697 (+)6.544e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)5.725e-17
Glyma.12G098000 hypothetical protein NA 1Chr12:8432078–8439545 (+)6.852e-11
Glyma.12G098300 hypothetical protein NA 1Chr12:8458112–8459817 (+)6.852e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.092e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.092e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.646e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.078e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.078e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.078e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)7.643e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)7.643e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)7.643e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)4.083e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)6.271e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.069e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)1.136e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)1.136e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)6.451e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.79e-13
Glyma.14G190100 hypothetical protein AT2G04280:AT2G04280:calcium ion-binding protein 1Chr14:45502008–45504459 (+)9.39e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)5.575e-12
Glyma.14G202400 hypothetical protein AT1G21480:AT1G21480:Exostosin family protein 1Chr14:46768802–46772377 (+)9.62e-11
Glyma.14G202500 hypothetical protein NA 1Chr14:46773824–46775761 (+)9.62e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)2.632e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)7.392e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.562e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)1.38e-12
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)1.317e-11
Glyma.16G069300 hypothetical protein AT3G01600:NAC044:NAC domain containing protein 44 1Chr16:6914905–6920531 (+)1.897e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)3.727e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)3.727e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)3.727e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)3.727e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)5.744e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.519e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)5.679e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.2e-14
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.363e-13
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)7.354e-12
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)3.568e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)3.045e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)2.803e-14
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)6.746e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.913e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.913e-11
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)3.494e-11
Glyma.19G188200 hypothetical protein NA 1Chr19:44647446–44649620 (-)8.634e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)6.007e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)8.285e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.989e-12