Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42480

Metabolite ID
P42480
Deionized mass
764.4315 Da
Average m/z
765.4386
Average RT
21.4148
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
76
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

76 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 4Chr16:25456379–25485759 (+)9.022e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.682e-15
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)6.545e-13
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)4.073e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.442e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)9.888e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)9.888e-13
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)2.379e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)4.632e-15
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)3.142e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)9.879e-12
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)8.877e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)2.767e-11
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)2.319e-14
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.519e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.427e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)3.001e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.133e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.106e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.681e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.696e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.696e-15
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)2.552e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.07e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.639e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)6.572e-12
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)6.572e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.469e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.442e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.442e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.442e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.442e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.413e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.221e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)3.044e-11
Glyma.09G159400 hypothetical protein NA 1Chr09:38324140–38329801 (+)8.745e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)4.576e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)4.576e-12
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)4.088e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)4.088e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.465e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.465e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.637e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.181e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.181e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.888e-13
Glyma.13G353500 hypothetical protein AT3G16480:MPPalpha:mitochondrial processing peptidase alpha subunit__AT1G51980:AT1G51980:Insulinase (Peptidase family M… 1Chr13:44204963–44209251 (+)3.88e-11
Glyma.14G063600 hypothetical protein AT5G05840:AT5G05840:replication factor C subunit, putative (DUF620) 1Chr14:5163603–5167769 (+)2.259e-12
Glyma.15G233600 hypothetical protein NA 1Chr15:43971478–43972713 (+)3.17e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.379e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)3.884e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)9.022e-14
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)9.022e-14
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)9.022e-14
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)9.022e-14
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.438e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)3.752e-13
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)3.128e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)6.545e-13
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)6.545e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.24e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.715e-12
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)6.28e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.897e-12
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)1.462e-11
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)5.002e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)8.609e-11
Glyma.18G265500 hypothetical protein AT5G39250:AT5G39250:F-box family protein 1Chr18:55019514–55022070 (-)6.739e-11
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)5.042e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.193e-13
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)5.78e-11
Glyma.18G301600 hypothetical protein AT2G33490:AT2G33490:hydroxyproline-rich glycoprotein family protein 1Chr18:57939468–57945328 (+)8.018e-13
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)2.309e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.57e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.57e-12
Glyma.20G129900 hypothetical protein NA 1Chr20:37091399–37092697 (-)7.751e-11