Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42354

Metabolite ID
P42354
Deionized mass
1044.2354 Da
Average m/z
1045.2401
Average RT
21.3561
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
133
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

133 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.363e-17
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 3Chr03:169480–172727 (+)7.853e-15
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 3Chr13:31727841–31735910 (-)9.167e-16
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.213e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.411e-15
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)7.945e-12
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)9.601e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)2.598e-12
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 2Chr02:11280858–11285984 (+)5.197e-11
Glyma.02G188300 hypothetical protein NA 2Chr02:35008552–35027979 (-)9.846e-11
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)3.067e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)5.612e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)4.068e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.318e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 2Chr13:31720004–31725252 (+)9.167e-16
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.363e-17
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)7.74e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)6.322e-12
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)7.723e-11
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)7.723e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.166e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.166e-11
Glyma.02G115800 hypothetical protein AT3G45400:AT3G45400:exostosin family protein 1Chr02:11274699–11278656 (-)7.2e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)7.172e-11
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)3.491e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)6.879e-15
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.563e-13
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)5.972e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.99e-15
Glyma.04G220400 hypothetical protein AT5G10020:AT5G10020:Leucine-rich receptor-like protein kinase family protein 1Chr04:49102263–49108229 (+)1.339e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)3.629e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.301e-15
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.352e-15
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.352e-15
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.24e-17
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.199e-16
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.199e-16
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.199e-16
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.326e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.077e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.017e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)4.664e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.017e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.017e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)4.664e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)8.619e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)5.553e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.425e-16
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)1.498e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)1.588e-11
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)6.085e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)1.653e-11
Glyma.08G142200 hypothetical protein NA 1Chr08:10833827–10834390 (-)9.25e-14
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 1Chr08:10843433–10846761 (-)9.25e-14
Glyma.08G142500 hypothetical protein NA 1Chr08:10848944–10850129 (+)6.133e-13
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)2.518e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)2.518e-11
Glyma.08G330600 hypothetical protein NA 1Chr08:44828516–44836550 (-)3.431e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)2.021e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.584e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.525e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.42e-13
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)2.558e-11
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)1.137e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.707e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.875e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.099e-15
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)1.317e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)1.251e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.057e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.057e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.057e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.057e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.943e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.565e-14
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)3.389e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)9.06e-16
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)9.06e-16
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)3.262e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.509e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.509e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.275e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.318e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)4.461e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.801e-13
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)1.249e-13
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)1.832e-13
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.522e-15
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)4.489e-11
Glyma.13G203600 hypothetical protein AT5G13490:AAC2:ADP/ATP carrier 2 1Chr13:31753843–31756013 (-)1.667e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)9.167e-16
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.244e-16
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)4.435e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.449e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)3.538e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)2.181e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)1.625e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.213e-13
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.213e-13
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.213e-13
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.213e-13
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)6.323e-13
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)6.621e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)7.028e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.77e-14
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)7.945e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)7.945e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)7.615e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.615e-16
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.533e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)8.069e-12
Glyma.17G137100 hypothetical protein AT4G22860:AT4G22860:Cell cycle regulated microtubule associated protein 1Chr17:11065492–11072635 (+)2.207e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)2.205e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)5.59e-11
Glyma.18G111000 F6'H1 feruloyl CoA ortho-hydroxylase 1 NA 1Chr18:13141007–13143331 (-)6.66e-12
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)3.14e-14
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)5.323e-13
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)7.304e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.854e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)1.854e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)5.518e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.314e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.314e-12
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)2.459e-11
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)2.459e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)9.509e-11
Glyma.20G098200 hypothetical protein AT1G56345:AT1G56345:Pseudouridine synthase family protein 1Chr20:34140611–34141832 (+)9.792e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)1.221e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)3.016e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)4.388e-11
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)1.905e-13
Glyma.20G217100 hypothetical protein AT1G64640:ENODL8:early nodulin-like protein 8 1Chr20:45278452–45280126 (-)2.082e-11
Glyma.20G217500 hypothetical protein AT5G41950:AT5G41950:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:45312584–45322950 (-)7.563e-11