Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P42023

Metabolite ID
P42023
Deionized mass
672.4183 Da
Average m/z
673.4257
Average RT
21.0822
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
97
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

97 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)6.068e-12
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)8.706e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)5.541e-14
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)2.4e-16
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)1.343e-12
Glyma.05G127500 hypothetical protein NA 2Chr05:32041345–32049554 (+)3.47e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.315e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)8.677e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)8.677e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)8.677e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.356e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)3.236e-11
Glyma.15G223600 hypothetical protein NA 2Chr15:40694344–40709542 (+)6.141e-12
Glyma.16G180100 hypothetical protein NA 2Chr16:34070806–34076053 (+)5.253e-17
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.353e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)7.561e-11
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)1.162e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.114e-14
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.027e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)9.53e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)9.53e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.03e-17
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.03e-17
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.03e-17
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)2.861e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.848e-12
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)5.097e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.74e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.146e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)4.168e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)4.168e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)4.168e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.066e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.066e-15
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.975e-15
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)3.191e-14
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)3.368e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)4.4e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)4.4e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)6.068e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)6.068e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)5.872e-13
Glyma.07G080900 hypothetical protein NA 1Chr07:7381339–7405785 (+)7.687e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.315e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.315e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.315e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.315e-12
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.237e-13
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.053e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)8.677e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)8.677e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)8.677e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)8.677e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)8.677e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)5.845e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)9.623e-12
Glyma.10G257500 hypothetical protein NA 1Chr10:48386988–48389180 (-)2.681e-11
Glyma.11G008600 hypothetical protein AT5G16680:AT5G16680:RING/FYVE/PHD zinc finger superfamily protein 1Chr11:596553–605827 (+)1.156e-12
Glyma.11G224600 hypothetical protein NA 1Chr11:31955324–31960347 (+)2.482e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.284e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.284e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.078e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.274e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)1.192e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.236e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)9.572e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)9.571e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)9.571e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.615e-11
Glyma.15G224500 hypothetical protein NA 1Chr15:40874637–40886928 (-)7.909e-11
Glyma.16G063600 hypothetical protein NA 1Chr16:6255512–6260421 (+)4.503e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)8.905e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)7.144e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)4.202e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.62e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)5.253e-17
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.422e-13
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)6.729e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)3.913e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)7.048e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)5.174e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)5.541e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.4e-16
Glyma.17G008200 hypothetical protein NA 1Chr17:685577–688365 (+)1.203e-11
Glyma.17G008600 hypothetical protein AT4G22360:AT4G22360:SWIB complex BAF60b domain-containing protein 1Chr17:711744–716737 (-)5.404e-11
Glyma.17G009100 hypothetical protein AT4G22300:SOBER1:carboxylesterase__AT4G22305:AT4G22305:alpha/beta-Hydrolases superfamily protein 1Chr17:739369–742912 (+)9.947e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)1.351e-11
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)3.04e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)2.144e-12
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)1.41e-12
Glyma.18G220200 hypothetical protein AT2G38650:GAUT7:galacturonosyltransferase 7 1Chr18:50714270–50723555 (-)2.021e-12
Glyma.18G220300 hypothetical protein NA 1Chr18:50719690–50720509 (-)2.021e-12
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)8.116e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.117e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.117e-12
Glyma.20G026700 hypothetical protein NA 1Chr20:2935653–2945665 (-)3.113e-11
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)5.961e-11