Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41927

Metabolite ID
P41927
Deionized mass
380.2187 Da
Average m/z
381.2246
Average RT
21.0299
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
138
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

138 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.445e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 2Chr02:7553127–7557516 (-)4.732e-19
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.265e-15
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)1.265e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.265e-15
Glyma.13G201600 hypothetical protein NA 2Chr13:31521512–31522992 (+)1.945e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.546e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.247e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)3.088e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)3.983e-11
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)1.523e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)2.106e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.024e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.024e-12
Glyma.02G081600 hypothetical protein NA 1Chr02:7054190–7055955 (-)1.939e-11
Glyma.02G081900 hypothetical protein AT1G43650:UMAMIT22:nodulin MtN21 /EamA-like transporter family protein 1Chr02:7075646–7080163 (-)5.481e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)5.738e-14
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)7.48e-14
Glyma.02G203800 hypothetical protein AT4G30935:WRKY32:WRKY DNA-binding protein 32 1Chr02:38920714–38930381 (+)6.523e-13
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)1.138e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)4.77e-12
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)4.77e-12
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)4.77e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.451e-11
Glyma.03G007900 hypothetical protein NA 1Chr03:764330–766878 (-)7.673e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.525e-13
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)6.338e-13
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)3.579e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)9.166e-11
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)5.696e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.159e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)4.634e-12
Glyma.04G124600 hypothetical protein NA 1Chr04:16329983–16332898 (-)7.582e-11
Glyma.05G123300 hypothetical protein NA 1Chr05:31696132–31700404 (+)1.804e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.951e-14
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)3.73e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.781e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.888e-15
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.888e-15
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.825e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.523e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.523e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.523e-15
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.679e-12
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)2.566e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.864e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.533e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.944e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.035e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.035e-15
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)4.563e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)4.563e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.445e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.445e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.517e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.602e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)7.686e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)5.496e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)5.496e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.395e-12
Glyma.07G040200 hypothetical protein NA 1Chr07:3324393–3329481 (-)8.058e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.206e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.39e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.265e-15
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)9.133e-15
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.265e-15
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.142e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)9.422e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.431e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.27e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)4.206e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)4.206e-11
Glyma.10G037300 hypothetical protein AT3G54670:TTN8:Structural maintenance of chromosomes (SMC) family protein 1Chr10:3270545–3283318 (-)8.017e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.338e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.338e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.338e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.338e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)7.927e-11
Glyma.11G165300 hypothetical protein AT3G18220:LPP4:Phosphatidic acid phosphatase (PAP2) family protein 1Chr11:15738707–15742464 (+)2.225e-11
Glyma.11G165400 hypothetical protein NA 1Chr11:15755004–15756199 (+)2.225e-11
Glyma.11G165500 hypothetical protein NA 1Chr11:15756251–15760166 (+)2.225e-11
Glyma.11G165900 hypothetical protein AT5G58510:AT5G58510:Rab3 GTPase-activating protein catalytic protein 1Chr11:15890687–15912099 (-)2.712e-11
Glyma.11G166100 hypothetical protein AT2G30110:UBA1:ubiquitin-activating enzyme 1 1Chr11:15941545–15948932 (+)2.712e-11
Glyma.11G166200 hypothetical protein NA 1Chr11:15951003–15963149 (-)2.712e-11
Glyma.11G167100 hypothetical protein NA 1Chr11:16310396–16317417 (+)2.712e-11
Glyma.11G167400 hypothetical protein NA 1Chr11:16491689–16494364 (-)2.712e-11
Glyma.11G167800 hypothetical protein NA 1Chr11:16649420–16666371 (+)2.712e-11
Glyma.11G169500 hypothetical protein NA 1Chr11:18001828–18002310 (+)2.712e-11
Glyma.11G169700 hypothetical protein AT1G07110:F2KP:fructose-2,6-bisphosphatase 1Chr11:18034188–18046104 (-)2.712e-11
Glyma.11G170100 hypothetical protein NA 1Chr11:18127748–18139401 (-)2.712e-11
Glyma.11G170300 hypothetical protein AT3G47340:ASN1:glutamine-dependent asparagine synthase 1 1Chr11:18242402–18247271 (+)2.712e-11
Glyma.11G170700 hypothetical protein AT5G23880:CPSF100:cleavage and polyadenylation specificity factor 100 1Chr11:18313678–18328202 (-)2.712e-11
Glyma.11G170800 hypothetical protein NA 1Chr11:18343004–18346283 (+)2.712e-11
Glyma.11G170900 hypothetical protein AT5G58610:AT5G58610:PHD finger transcription factor 1Chr11:18345392–18359356 (-)2.712e-11
Glyma.12G031300 hypothetical protein AT2G16660:AT2G16660:Major facilitator superfamily protein 1Chr12:2336775–2341297 (-)1.924e-11
Glyma.12G033700 hypothetical protein AT4G34830:MRL1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr12:2533993–2544977 (+)3.095e-11
Glyma.12G035600 hypothetical protein AT5G45600:GAS41:YEATS family protein 1Chr12:2597690–2600977 (+)3.943e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.761e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.761e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.424e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.166e-11
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)9.655e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)3.671e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)3.671e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)3.671e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)4.769e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.056e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.25e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.247e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.318e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.486e-13
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.451e-12
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)4.211e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)2.723e-13
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)4.717e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.155e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.072e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)5.554e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)3.053e-13
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)1.784e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)4.7e-11
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)9.866e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.303e-11
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)9.692e-11
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)9.692e-11
Glyma.17G008200 hypothetical protein NA 1Chr17:685577–688365 (+)4.277e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)7.789e-11
Glyma.18G050100 hypothetical protein NA 1Chr18:4323734–4329696 (+)2.449e-12
Glyma.18G072800 hypothetical protein AT1G55760:AT1G55760:BTB/POZ domain-containing protein 1Chr18:6873417–6878947 (-)1.149e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)1.256e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)6.087e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)6.087e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.1e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.1e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)1.668e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)4.143e-12
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)7.851e-12
Glyma.20G217100 hypothetical protein AT1G64640:ENODL8:early nodulin-like protein 8 1Chr20:45278452–45280126 (-)1.973e-11