Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41869

Metabolite ID
P41869
Deionized mass
469.2026 Da
Average m/z
470.2090
Average RT
20.9825
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
123
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

123 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G090600 hypothetical protein AT3G20290:EHD1:EPS15 homology domain 1 4Chr18:8991445–9001857 (-)2.792e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.342e-18
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)5.34e-13
Glyma.02G188300 hypothetical protein NA 2Chr02:35008552–35027979 (-)2.287e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 2Chr06:10709045–10716245 (-)6.17e-18
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 2Chr08:9198213–9201688 (-)4.979e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.421e-15
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)5.215e-13
Glyma.01G171900 hypothetical protein AT5G66460:MAN7:Glycosyl hydrolase superfamily protein 1Chr01:50912520–50915454 (-)1.566e-11
Glyma.01G172500 hypothetical protein NA 1Chr01:50960881–50965173 (-)1.566e-11
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)4.423e-11
Glyma.01G211800 hypothetical protein NA 1Chr01:54334961–54337099 (-)1.566e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)3.981e-12
Glyma.01G235200 hypothetical protein AT1G05460:SDE3:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr01:56103784–56110667 (-)3.905e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)6.065e-12
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)8.201e-12
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)7.9e-11
Glyma.02G203800 hypothetical protein AT4G30935:WRKY32:WRKY DNA-binding protein 32 1Chr02:38920714–38930381 (+)2.481e-12
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)2.893e-13
Glyma.02G265700 hypothetical protein NA 1Chr02:45059017–45060529 (-)3.314e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)2.176e-14
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)2.176e-14
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)2.176e-14
Glyma.02G304500 hypothetical protein AT5G48300:ADG1:ADP glucose pyrophosphorylase 1 1Chr02:47950037–47954106 (+)1.936e-12
Glyma.03G013500 hypothetical protein AT1G01700:ROPGEF2:RHO guanyl-nucleotide exchange factor 2 1Chr03:1370977–1375024 (+)1.012e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.553e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.306e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.441e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)8.786e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.699e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.323e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.323e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.323e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.877e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.376e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.418e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.076e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.164e-15
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)4.43e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)4.43e-11
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)4.083e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.704e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.704e-15
Glyma.06G126400 hypothetical protein AT5G53150:AT5G53150:DnaJ heat shock amino-terminal domain protein 1Chr06:10356650–10362151 (-)5.62e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.257e-16
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.685e-16
Glyma.06G129400 hypothetical protein AT5G24300:SS1:Glycogen/starch synthases, ADP-glucose type 1Chr06:10632042–10640023 (+)3.194e-15
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)2.613e-18
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)2.613e-18
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)6.3e-16
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)9.867e-12
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)6.228e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.359e-11
Glyma.07G078900 hypothetical protein AT3G61080:AT3G61080:Protein kinase superfamily protein 1Chr07:7187362–7192149 (+)5.572e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)5.313e-13
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)3.632e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)2.586e-11
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)6.68e-12
Glyma.09G004900 hypothetical protein AT4G22030:AT4G22030:F-box protein with a domain protein 1Chr09:397361–398713 (-)5.512e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)5.01e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)6.302e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)3.606e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.856e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.216e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.597e-15
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)3.93e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.372e-13
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)1.733e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)4.347e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)3.617e-12
Glyma.10G266400 hypothetical protein NA 1Chr10:48984735–48993690 (+)9.072e-11
Glyma.11G008600 hypothetical protein AT5G16680:AT5G16680:RING/FYVE/PHD zinc finger superfamily protein 1Chr11:596553–605827 (+)7.266e-11
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)3.106e-14
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)2.607e-12
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)3.091e-12
Glyma.11G182800 hypothetical protein AT2G27460:AT2G27460:sec23/sec24 transport family protein 1Chr11:25044939–25052549 (+)3.05e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)8.731e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.109e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.109e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)9.164e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.403e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)4.43e-11
Glyma.13G133800 hypothetical protein AT3G53520:UXS1:UDP-glucuronic acid decarboxylase 1 1Chr13:24601574–24606756 (-)1.026e-11
Glyma.13G133900 hypothetical protein NA 1Chr13:24613843–24616128 (+)1.026e-11
Glyma.13G134000 hypothetical protein NA 1Chr13:24618272–24619048 (-)1.026e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.342e-18
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)7.736e-18
Glyma.13G135100 hypothetical protein AT5G02750:SGR9:RING/U-box superfamily protein 1Chr13:24744740–24746437 (+)1.69e-13
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.182e-11
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)4.668e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)3.661e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)3.661e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)3.661e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.725e-11
Glyma.14G119800 hypothetical protein AT1G43850:SEU:SEUSS transcriptional co-regulator 1Chr14:16751592–16763348 (-)5.056e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)1.243e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)6.666e-11
Glyma.15G107500 hypothetical protein NA 1Chr15:8435042–8443925 (+)3.487e-11
Glyma.15G108100 hypothetical protein NA 1Chr15:8500878–8505582 (-)3.901e-12
Glyma.15G108400 hypothetical protein AT1G11840:GLX1:glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein 1Chr15:8534420–8539477 (-)7.022e-11
Glyma.15G108500 hypothetical protein NA 1Chr15:8535758–8538465 (+)7.022e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.844e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.654e-11
Glyma.16G039800 hypothetical protein NA 1Chr16:3730538–3733668 (-)9.32e-11
Glyma.16G040700 hypothetical protein AT3G03890:AT3G03890:FMN binding protein 1Chr16:3825551–3830340 (-)9.567e-11
Glyma.16G041000 hypothetical protein AT5G18140:AT5G18140:Chaperone DnaJ-domain superfamily protein 1Chr16:3852109–3856099 (+)9.567e-11
Glyma.16G041200 gdh1 AT3G03910:GDH3:glutamate dehydrogenase 3__AT5G18170:GDH1:glutamate dehydrogenase 1 1Chr16:3861427–3869280 (+)9.567e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)5.375e-13
Glyma.16G105300 hypothetical protein AT4G19120:ERD3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:21299154–21305321 (-)6.011e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)7.881e-14
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)8.455e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.707e-11
Glyma.16G165300 hypothetical protein NA 1Chr16:32447317–32449688 (-)5.433e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.094e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)6.298e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)5.601e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.111e-12
Glyma.16G210500 hypothetical protein NA 1Chr16:36959125–36962955 (+)4.346e-11
Glyma.18G090700 hypothetical protein NA 1Chr18:9016075–9018183 (+)2.792e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)3.251e-11
Glyma.18G206000 hypothetical protein NA 1Chr18:48972350–48976819 (+)6.745e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)7.762e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)3.194e-11