Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41581

Metabolite ID
P41581
Deionized mass
178.0990 Da
Average m/z
357.2038
Average RT
20.8553
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
99
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

99 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.15G140700 hypothetical protein NA 4Chr15:11520847–11522863 (-)3.057e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.545e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)3.376e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)2.561e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)3.233e-14
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 2Chr10:40628401–40633140 (-)6.946e-12
Glyma.12G197600 hypothetical protein AT4G03210:XTH9:xyloglucan endotransglucosylase/hydrolase 9 2Chr12:35879106–35881779 (+)1.294e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)9.508e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)9.508e-14
Glyma.15G140800 hypothetical protein NA 2Chr15:11525771–11533394 (+)3.377e-11
Glyma.15G141200 hypothetical protein AT3G17000:UBC32:ubiquitin-conjugating enzyme 32 2Chr15:11557041–11559982 (-)6.095e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)7.27e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)3.501e-11
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)5.683e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)3.03e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)7.678e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)3.594e-12
Glyma.01G022800 hypothetical protein AT5G65490:AT5G65490:suppressor-like protein 1Chr01:2296901–2303966 (+)3.492e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)6.913e-13
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)1.757e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.572e-12
Glyma.04G234900 hypothetical protein AT5G53000:TAP46:2A phosphatase associated protein of 46 kD 1Chr04:50332008–50336222 (-)4.651e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.855e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.64e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.64e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.64e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.019e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.783e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)4.299e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)4.299e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)4.299e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)7.136e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)2.231e-12
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)2.231e-12
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)1.655e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.186e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.186e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)3.257e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.494e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.545e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.545e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.745e-12
Glyma.07G078000 hypothetical protein NA 1Chr07:7121636–7126695 (+)3.32e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)2.875e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)6.399e-12
Glyma.08G137600 hypothetical protein AT4G39780:AT4G39780:Integrase-type DNA-binding superfamily protein 1Chr08:10551821–10553620 (-)3.083e-13
Glyma.08G294800 hypothetical protein AT1G59710:AT1G59710:actin cross-linking protein (DUF569) 1Chr08:40993962–41001629 (+)2.111e-12
Glyma.08G294900 hypothetical protein AT1G59720:CRR28:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:41002768–41005138 (-)1.31e-12
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)1.657e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.514e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.98e-13
Glyma.09G200300 hypothetical protein NA 1Chr09:42466263–42471449 (+)2.435e-12
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)1.025e-17
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)7.641e-11
Glyma.10G257500 hypothetical protein NA 1Chr10:48386988–48389180 (-)5.703e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)4.951e-12
Glyma.10G264300 Mediator of RNA polymerase II transcription subunit 21 AT4G04780:MED21:mediator 21 1Chr10:48858818–48862498 (-)2.574e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)7.374e-14
Glyma.10G266400 hypothetical protein NA 1Chr10:48984735–48993690 (+)1.304e-13
Glyma.10G269400 hypothetical protein NA 1Chr10:49177225–49187919 (-)7.803e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)5.978e-13
Glyma.12G196800 hypothetical protein AT4G15180:SDG2:SET domain protein 2 1Chr12:35784957–35801339 (+)1.294e-11
Glyma.12G197500 hypothetical protein NA 1Chr12:35869162–35874097 (+)1.294e-11
Glyma.12G197800 hypothetical protein NA 1Chr12:35892655–35896825 (-)1.294e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.015e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.015e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)7.389e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.376e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.198e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.964e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.964e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.508e-14
Glyma.14G043800 hypothetical protein NA 1Chr14:3329698–3331556 (+)7.057e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.167e-11
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)6.431e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.622e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.897e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)7.006e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.74e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)9.942e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.118e-12
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)1.25e-11
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)6.227e-12
Glyma.16G050000 hypothetical protein AT5G14040:PHT3;1:phosphate transporter 3;1 1Chr16:4788380–4801207 (+)3.451e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)3.235e-12
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)1.421e-15
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)1.421e-15
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)1.421e-15
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)4.742e-14
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)3.501e-11
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 1Chr16:24720965–24731678 (-)2.029e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.799e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.799e-11
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)3.089e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)2.561e-11
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)2.723e-11
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)4.52e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)3.763e-11
Glyma.19G022500 hypothetical protein AT5G15230:GASA4:GAST1 protein homolog 4 1Chr19:2574642–2577346 (+)1.294e-11