Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41500

Metabolite ID
P41500
Deionized mass
110.0721 Da
Average m/z
221.1512
Average RT
20.7951
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
100
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

100 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G036800 TBP1 AT3G13445:TBP1:TATA binding protein 1 4Chr03:4472672–4477787 (-)4.733e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.647e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.783e-14
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)3.997e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)8.472e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 2Chr08:9198213–9201688 (-)3.59e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.322e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.322e-14
Glyma.15G140700 hypothetical protein NA 2Chr15:11520847–11522863 (-)2.187e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.647e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.075e-11
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)6.386e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.138e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.138e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.169e-13
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)1.855e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.594e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.037e-15
Glyma.04G220400 hypothetical protein AT5G10020:AT5G10020:Leucine-rich receptor-like protein kinase family protein 1Chr04:49102263–49108229 (+)1.843e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)1.096e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)1.096e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.791e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.631e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)5.852e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.489e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.32e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.228e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)3.852e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.942e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.942e-15
Glyma.06G204200 hypothetical protein AT5G08050:AT5G08050:wiskott-aldrich syndrome family protein, putative (DUF1118) 1Chr06:19170925–19173352 (+)3.685e-11
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)8.129e-11
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)8.129e-11
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)8.129e-11
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)8.129e-11
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)8.129e-11
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)8.129e-11
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)8.129e-11
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)8.129e-11
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)8.129e-11
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)8.129e-11
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)4.516e-11
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)4.516e-11
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)4.516e-11
Glyma.06G284900 BZIP50 bZIP transcription factor bZIP50 AT3G58120:BZIP61:Basic-leucine zipper (bZIP) transcription factor family protein__AT2G42380:BZIP34:Basic-leucine zipper… 1Chr06:47339957–47343650 (-)2.56e-11
Glyma.06G291300 hypothetical protein NA 1Chr06:48016841–48019943 (+)5.39e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.913e-16
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)4.782e-15
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.913e-16
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.913e-16
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)4.782e-15
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)9.127e-14
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)6.98e-13
Glyma.06G293600 hypothetical protein AT1G03650:AT1G03650:Acyl-CoA N-acyltransferases (NAT) superfamily protein 1Chr06:48251255–48252791 (+)2.594e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.749e-12
Glyma.07G040200 hypothetical protein NA 1Chr07:3324393–3329481 (-)8.624e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.397e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.896e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.434e-12
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)1.434e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.363e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.246e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.485e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.485e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.485e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.485e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.078e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.841e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)6.851e-12
Glyma.12G196800 hypothetical protein AT4G15180:SDG2:SET domain protein 2 1Chr12:35784957–35801339 (+)1.13e-12
Glyma.12G197400 TPS14 terpene synthase 14 NA 1Chr12:35854108–35858237 (+)2.334e-11
Glyma.12G197600 hypothetical protein AT4G03210:XTH9:xyloglucan endotransglucosylase/hydrolase 9 1Chr12:35879106–35881779 (+)9.288e-15
Glyma.12G198500 hypothetical protein NA 1Chr12:35984627–35988724 (-)1.136e-11
Glyma.12G199100 hypothetical protein NA 1Chr12:36031074–36033488 (+)1.136e-11
Glyma.12G199500 hypothetical protein AT4G28100:AT4G28100:uncharacterized protein 1Chr12:36084203–36085916 (-)1.136e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.382e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.382e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.947e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.372e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.372e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.783e-14
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)6.541e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.793e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.793e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.322e-14
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)5.08e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.078e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.078e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.546e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.662e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.015e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.968e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.102e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)2.058e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.082e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.082e-12
Glyma.20G098200 hypothetical protein AT1G56345:AT1G56345:Pseudouridine synthase family protein 1Chr20:34140611–34141832 (+)5.105e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)2.969e-11
Glyma.20G235300 hypothetical protein AT1G09060:AT1G09060:JmjC domain protein JMJ24 1Chr20:46790436–46798140 (-)2.631e-11
Glyma.20G235400 hypothetical protein AT4G34910:AT4G34910:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr20:46801199–46803834 (-)2.631e-11