Overview Annotation GWAS Evidence Associated genes

P41375

Metabolite ID
P41375
Deionized mass
207.1309 Da
Average m/z
208.1388
Average RT
20.7363
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
154
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

154 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)4.226e-14
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)1.871e-13
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)3.897e-13
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.481e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.768e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.165e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)2.114e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 2Chr03:169480–172727 (+)6.771e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 2Chr07:9523110–9526319 (+)4.059e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.454e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)5.08e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.93e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.741e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.741e-13
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)4.367e-11
Glyma.16G105100 hypothetical protein NA 2Chr16:21259552–21267517 (-)2.688e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)1.057e-12
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)3.355e-13
Glyma.19G009000 hypothetical protein AT5G14780:FDH:formate dehydrogenase 2Chr19:860974–865476 (+)4.504e-16
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)8.833e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.768e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)4.063e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)9.102e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)3.984e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.198e-11
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)4.908e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)4.908e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)4.908e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)4.908e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)4.908e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)4.908e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)4.908e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.156e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.156e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.495e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)3.777e-13
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)1.689e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)6.96e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.914e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.825e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.035e-12
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)7.72e-11
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)7.72e-11
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)7.72e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.943e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.697e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.113e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.241e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.241e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.328e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.996e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.996e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.996e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.612e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.374e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.655e-17
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.064e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.165e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.165e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)3.534e-12
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)2.846e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)2.723e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.946e-14
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)5.958e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.106e-12
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)1.823e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.584e-11
Glyma.09G068500 PHD6 PHD finger protein GmPHD6 AT5G20510:AL5:alfin-like 5 1Chr09:6937814–6941687 (+)5.832e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)1.656e-11
Glyma.09G069400 hypothetical protein NA 1Chr09:7055066–7058933 (+)6.109e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)6.002e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.001e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.478e-14
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)1.472e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)2.133e-16
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)3.986e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.213e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)6.982e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)3.792e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.6e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.6e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.6e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.6e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.651e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.151e-15
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)9.045e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)8.658e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)8.938e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.549e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.549e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.549e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)3.412e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)9.8e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)9.8e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.792e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.792e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.429e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.429e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)6.515e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.136e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.543e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.543e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.741e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.741e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.891e-13
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.519e-11
Glyma.14G044100 hypothetical protein AT5G62300:AT5G62300:Ribosomal protein S10p/S20e family protein 1Chr14:3347545–3348907 (+)2.488e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.761e-12
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)3.271e-11
Glyma.14G084200 hypothetical protein NA 1Chr14:7375402–7379417 (-)4.492e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)3.364e-12
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)6.676e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.969e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.646e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.969e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.969e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.21e-17
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.517e-14
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.809e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)3.776e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)2.57e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)7.365e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.465e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)6.107e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)8.748e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.768e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.207e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)5.325e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.589e-12
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)2.311e-13
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)7.2e-15
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)1.598e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)7.2e-15
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)8.556e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)8.556e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)9.523e-14
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)6.185e-12
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)4.844e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.727e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.31e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.149e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)7.063e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)2.836e-14
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.877e-15
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)2.929e-11
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)3.98e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)2.128e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)7.886e-13
Glyma.19G009900 hypothetical protein NA 1Chr19:923053–937826 (-)6.138e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)8.833e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.458e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.458e-14
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.132e-12
Glyma.20G105400 hypothetical protein AT2G17010:AT2G17010:Mechanosensitive ion channel family protein 1Chr20:34796301–34808587 (+)9.523e-11