Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P40695

Metabolite ID
P40695
Deionized mass
736.4305 Da
Average m/z
737.4425
Average RT
20.3147
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
137
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

137 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)5.016e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.259e-13
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)2.68e-12
Glyma.08G300400 hypothetical protein AT2G02910:AT2G02910:transmembrane protein (DUF616) 3Chr08:41830891–41843406 (-)4.336e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.526e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)5.742e-17
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)3.553e-15
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.248e-11
Glyma.01G018000 hypothetical protein NA 2Chr01:1736217–1737749 (-)5.115e-12
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)3.762e-13
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)2.84e-14
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)2.888e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.758e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.786e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.549e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.549e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 2Chr16:26057276–26069534 (+)4.286e-16
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.32e-16
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)3.231e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.259e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)7.188e-15
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)3.562e-13
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 2Chr19:38632803–38635633 (+)3.84e-13
Glyma.01G033700 hypothetical protein NA 1Chr01:3526381–3533019 (+)1.345e-11
Glyma.01G033800 hypothetical protein NA 1Chr01:3535699–3539383 (+)1.542e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)3.043e-13
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 1Chr01:3821377–3825854 (-)2.68e-12
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)6.162e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.186e-11
Glyma.02G294200 hypothetical protein AT3G20290:EHD1:EPS15 homology domain 1 1Chr02:47256480–47263517 (+)3.474e-11
Glyma.02G294900 hypothetical protein AT5G55220:AT5G55220:trigger factor type chaperone family protein 1Chr02:47300149–47306133 (+)1.111e-11
Glyma.02G295000 hypothetical protein AT4G26770:AT4G26770:Phosphatidate cytidylyltransferase family protein 1Chr02:47306160–47312036 (-)1.111e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)4.48e-11
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)4.111e-12
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)1.497e-13
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.26e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.094e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.094e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.094e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)3.023e-12
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)2.356e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.348e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.355e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.418e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.465e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.112e-14
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.608e-14
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.608e-14
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.608e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.187e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.187e-14
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)4.582e-11
Glyma.06G204200 hypothetical protein AT5G08050:AT5G08050:wiskott-aldrich syndrome family protein, putative (DUF1118) 1Chr06:19170925–19173352 (+)9.146e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)7.402e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)7.402e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.629e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)6.701e-13
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)5.386e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.302e-14
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.758e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.758e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.758e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.758e-13
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)1.678e-11
Glyma.08G150400 hypothetical protein NA 1Chr08:11565265–11571675 (+)1.15e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)4.197e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)9.211e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)9.211e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.798e-15
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)4.324e-13
Glyma.08G300000 hypothetical protein NA 1Chr08:41812728–41812868 (+)4.336e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)9.674e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)9.674e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)4.483e-16
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.026e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.026e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.026e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.026e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.493e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.619e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)6.934e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)1.628e-11
Glyma.11G037100 hypothetical protein AT2G35660:CTF2A:FAD/NAD(P)-binding oxidoreductase family protein 1Chr11:2678678–2681764 (-)1.135e-14
Glyma.11G037400 hypothetical protein NA 1Chr11:2693616–2698160 (+)3.158e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)3.11e-18
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.087e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.087e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.786e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.915e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)6.641e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)4.326e-16
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.804e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.804e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.549e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.917e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.917e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.917e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)5.329e-12
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)2.535e-12
Glyma.13G353500 hypothetical protein AT3G16480:MPPalpha:mitochondrial processing peptidase alpha subunit__AT1G51980:AT1G51980:Insulinase (Peptidase family M… 1Chr13:44204963–44209251 (+)8.383e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.293e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.044e-14
Glyma.14G190100 hypothetical protein AT2G04280:AT2G04280:calcium ion-binding protein 1Chr14:45502008–45504459 (+)7.092e-16
Glyma.14G190300 hypothetical protein AT2G04240:XERICO:RING/U-box superfamily protein 1Chr14:45531920–45533895 (-)4.245e-12
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)4.245e-12
Glyma.14G190800 hypothetical protein NA 1Chr14:45566998–45568488 (-)5.825e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)2.036e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)3.132e-13
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)5.016e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)4.716e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.526e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.526e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.526e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.526e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.149e-13
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)5.301e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)3.553e-15
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)3.553e-15
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.854e-14
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.533e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)4.055e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)2.235e-11
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)1.631e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.248e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)6.766e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)6.766e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)5.696e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)5.696e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)7.519e-12
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)6.825e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)6.468e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)6.468e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.434e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.434e-12
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)7.008e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)1.769e-16
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)2.654e-12