Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P40520

Metabolite ID
P40520
Deionized mass
286.1913 Da
Average m/z
287.2002
Average RT
20.2170
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
130
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

130 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)5.087e-19
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)8.061e-15
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.654e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.259e-15
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)8.028e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)1.522e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)2.98e-19
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)9.487e-15
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.521e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)4.019e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.936e-12
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)1.309e-12
Glyma.15G140700 hypothetical protein NA 2Chr15:11520847–11522863 (-)4.778e-13
Glyma.15G141200 hypothetical protein AT3G17000:UBC32:ubiquitin-conjugating enzyme 32 2Chr15:11557041–11559982 (-)5.367e-11
Glyma.16G111100 hypothetical protein NA 2Chr16:24438458–24444801 (+)5.087e-19
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 2Chr16:24720965–24731678 (-)6.187e-12
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)1.022e-15
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)5.78e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)6.629e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)8.061e-15
Glyma.02G067600 hypothetical protein NA 1Chr02:5975111–5976381 (+)3.772e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)5.621e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)5.87e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.589e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.643e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)4.057e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.541e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.541e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.541e-13
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)3.803e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.639e-19
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.535e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.442e-14
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)1.459e-13
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)1.459e-13
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)1.683e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.156e-17
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.156e-17
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.991e-13
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)7.246e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)5.043e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.572e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.254e-14
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.572e-13
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.572e-13
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.254e-14
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)8.961e-12
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)8.961e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.654e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.654e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.407e-14
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)7.919e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)1.863e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)7.198e-12
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)4.875e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)9.527e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.03e-18
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.908e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)6.12e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)6.427e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.242e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)8.512e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)8.512e-13
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)1.999e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)8.512e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)8.512e-13
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)2.863e-11
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)2.863e-11
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)2.863e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.542e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.014e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)1.05e-11
Glyma.11G119600 hypothetical protein AT2G16130:PMT2:polyol/monosaccharide transporter 2 1Chr11:9127497–9129972 (-)1.798e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.397e-17
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.397e-17
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.397e-17
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.437e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.437e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.407e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.019e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)9.298e-13
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.12e-11
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)1.482e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.259e-15
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)1.33e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)5.054e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)5.054e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)5.054e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.07e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.798e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)4.852e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.936e-12
Glyma.14G202400 hypothetical protein AT1G21480:AT1G21480:Exostosin family protein 1Chr14:46768802–46772377 (+)2.309e-11
Glyma.14G202500 hypothetical protein NA 1Chr14:46773824–46775761 (+)2.309e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)6.481e-11
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)3.872e-11
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)3.872e-11
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)5.253e-11
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)3.9e-12
Glyma.15G049800 hypothetical protein NA 1Chr15:3927843–3933656 (-)4.12e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.957e-17
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.134e-23
Glyma.15G140500 hypothetical protein NA 1Chr15:11496139–11502209 (-)2.02e-11
Glyma.15G140900 hypothetical protein AT3G66658:ALDH22A1:aldehyde dehydrogenase 22A1 1Chr15:11538070–11545857 (-)4.568e-12
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)2.785e-16
Glyma.15G275100 hypothetical protein AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein 1Chr15:51350998–51355557 (-)3.16e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)8.013e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)2.364e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)9.005e-15
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)5.565e-16
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)3.609e-11
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)5.13e-17
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)8.028e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)8.028e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)8.028e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)8.028e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)1.702e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.995e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.347e-12
Glyma.16G158300 hypothetical protein AT5G43140:AT5G43140:Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 1Chr16:31859405–31862567 (+)9.307e-12
Glyma.16G158400 hypothetical protein AT5G48100:TT10:Laccase/Diphenol oxidase family protein 1Chr16:31863760–31867327 (-)9.307e-12
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)9.851e-11
Glyma.19G009000 hypothetical protein AT5G14780:FDH:formate dehydrogenase 1Chr19:860974–865476 (+)6.194e-12
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)5.861e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.864e-18
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.864e-18
Glyma.20G034000 hypothetical protein AT2G03060:AGL30:AGAMOUS-like 30 1Chr20:4655939–4664465 (-)3.104e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)8.84e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)5.924e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)2.716e-11