P40427
Metabolite ID
P40427
Deionized mass
640.3421 Da
Average m/z
641.3485
Average RT
20.1678
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
112
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
112 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.16G111500 | hypothetical protein | AT4G35500:AT4G35500:Protein kinase superfamily protein | 4 | Chr16:24626024–24635513 (+) | 6.379e-13 | |
| Glyma.19G011800 | hypothetical protein | AT3G01420:DOX1:Peroxidase superfamily protein | 4 | Chr19:1134716–1143232 (+) | 1.61e-11 | |
| Glyma.13G134400 | hypothetical protein | AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein | 3 | Chr13:24677399–24693129 (-) | 3.767e-12 | |
| Glyma.02G062600 | hypothetical protein | AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein | 2 | Chr02:5645621–5648965 (+) | 4.757e-13 | |
| Glyma.03G018800 | hypothetical protein | AT2G45680:TCP9:TCP family transcription factor | 2 | Chr03:1875182–1876855 (+) | 4.691e-15 | |
| Glyma.03G019600 | hypothetical protein | AT2G45640:SAP18:SIN3 associated polypeptide P18 | 2 | Chr03:2007617–2009871 (+) | 9.534e-14 | |
| Glyma.09G237900 | hypothetical protein | NA | 2 | Chr09:45960580–45964267 (+) | 1.181e-13 | |
| Glyma.09G282900 | hypothetical protein | AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 | 2 | Chr09:49863377–49871270 (+) | 2.42e-16 | |
| Glyma.12G197600 | hypothetical protein | AT4G03210:XTH9:xyloglucan endotransglucosylase/hydrolase 9 | 2 | Chr12:35879106–35881779 (+) | 6.558e-11 | |
| Glyma.13G135700 | hypothetical protein | NA | 2 | Chr13:24812720–24818735 (+) | 7.919e-12 | |
| Glyma.13G135800 | hypothetical protein | AT5G02800:CDL1:Protein kinase superfamily protein | 2 | Chr13:24820151–24823999 (-) | 7.919e-12 | |
| Glyma.16G111100 | hypothetical protein | NA | 2 | Chr16:24438458–24444801 (+) | 6.379e-13 | |
| Glyma.16G111800 | hypothetical protein | AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein | 2 | Chr16:24720965–24731678 (-) | 1.13e-11 | |
| Glyma.17G216700 | hypothetical protein | AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein | 2 | Chr17:36510062–36519347 (+) | 7.908e-12 | |
| Glyma.19G011700 | hypothetical protein | AT3G01420:DOX1:Peroxidase superfamily protein | 2 | Chr19:1123637–1130946 (+) | 9.81e-12 | |
| Glyma.01G021600 | hypothetical protein | AT5G65540:AT5G65540:transcription initiation factor TFIID subunit | 1 | Chr01:2189923–2194362 (-) | 4.505e-12 | |
| Glyma.01G021700 | hypothetical protein | NA | 1 | Chr01:2197811–2200232 (+) | 1.35e-12 | |
| Glyma.01G022000 | hypothetical protein | NA | 1 | Chr01:2209688–2210849 (-) | 1.35e-12 | |
| Glyma.01G022200 | hypothetical protein | NA | 1 | Chr01:2212834–2213622 (+) | 1.35e-12 | |
| Glyma.02G061700 | hypothetical protein | AT2G23450:AT2G23450:Protein kinase superfamily protein | 1 | Chr02:5577271–5582873 (-) | 1.288e-11 | |
| Glyma.03G007100 | hypothetical protein | AT5G17780:AT5G17780:alpha/beta-Hydrolases superfamily protein__AT5G17720:AT5G17720:alpha/beta-Hydrolases superfamily pr… | 1 | Chr03:647777–651152 (-) | 9.081e-13 | |
| Glyma.03G018600 | hypothetical protein | AT2G45695:AT2G45695:Ubiquitin related modifier 1 | 1 | Chr03:1859210–1862572 (-) | 3.03e-15 | |
| Glyma.03G019700 | hypothetical protein | AT3G61130:GAUT1:galacturonosyltransferase 1 | 1 | Chr03:2010835–2018418 (+) | 5.661e-13 | |
| Glyma.03G021600 | hypothetical protein | AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … | 1 | Chr03:2240686–2246512 (-) | 8.792e-11 | |
| Glyma.03G021700 | hypothetical protein | AT2G45490:AUR3:ataurora3 | 1 | Chr03:2248429–2251737 (+) | 1.096e-12 | |
| Glyma.03G022100 | hypothetical protein | AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein | 1 | Chr03:2301675–2307263 (+) | 2.004e-14 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 1 | Chr03:2423540–2428634 (-) | 4.943e-11 | |
| Glyma.03G169700 | hypothetical protein | AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… | 1 | Chr03:38442950–38448706 (+) | 6.83e-11 | |
| Glyma.03G177700 | hypothetical protein | NA | 1 | Chr03:39046772–39051158 (+) | 1.931e-11 | |
| Glyma.05G127800 | hypothetical protein | AT4G18240:SS4:starch synthase 4 | 1 | Chr05:32125404–32138244 (+) | 5.67e-11 | |
| Glyma.05G127900 | SAD1 | AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein | 1 | Chr05:32139620–32141770 (-) | 5.67e-11 | |
| Glyma.05G128200 | hypothetical protein | AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein | 1 | Chr05:32158034–32162343 (-) | 5.67e-11 | |
| Glyma.05G131200 | hypothetical protein | AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein | 1 | Chr05:32421116–32425198 (-) | 4.715e-11 | |
| Glyma.05G219200 | hypothetical protein | NA | 1 | Chr05:39875137–39879113 (-) | 5.517e-13 | |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 1.47e-13 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 4.505e-11 | |
| Glyma.05G237800 | hypothetical protein | AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 | 1 | Chr05:41406807–41413022 (-) | 1.708e-12 | |
| Glyma.06G085200 | hypothetical protein | NA | 1 | Chr06:6540849–6545557 (+) | 5.586e-11 | |
| Glyma.06G125200 | hypothetical protein | AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 | 1 | Chr06:10209787–10215982 (+) | 8.639e-15 | |
| Glyma.06G125300 | hypothetical protein | AT5G24105:AGP41:arabinogalactan protein 41 | 1 | Chr06:10216506–10218901 (-) | 8.639e-15 | |
| Glyma.06G126500 | hypothetical protein | AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein | 1 | Chr06:10367536–10373426 (-) | 2.77e-12 | |
| Glyma.06G126900 | hypothetical protein | AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) | 1 | Chr06:10403126–10408307 (-) | 3.345e-11 | |
| Glyma.06G136200 | hypothetical protein | AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein | 1 | Chr06:11160066–11162505 (-) | 1.801e-11 | |
| Glyma.06G291600 | hypothetical protein | AT4G22930:PYR4:pyrimidin 4 | 1 | Chr06:48024204–48029614 (+) | 2.056e-14 | |
| Glyma.06G291800 | hypothetical protein | NA | 1 | Chr06:48044194–48047197 (-) | 4.029e-13 | |
| Glyma.06G292000 | hypothetical protein | NA | 1 | Chr06:48081084–48084476 (-) | 2.056e-14 | |
| Glyma.06G292100 | hypothetical protein | NA | 1 | Chr06:48095366–48097378 (+) | 2.056e-14 | |
| Glyma.06G292200 | hypothetical protein | AT5G44290:AT5G44290:Protein kinase superfamily protein | 1 | Chr06:48100578–48107433 (-) | 4.029e-13 | |
| Glyma.06G292400 | hypothetical protein | AT4G28320:MAN5:Glycosyl hydrolase superfamily protein | 1 | Chr06:48130296–48134955 (+) | 6.763e-14 | |
| Glyma.06G292900 | hypothetical protein | AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) | 1 | Chr06:48170133–48173010 (-) | 2.001e-11 | |
| Glyma.07G015700 | hypothetical protein | AT1G79750:NADP-ME4:NADP-malic enzyme 4 | 1 | Chr07:1244977–1251198 (-) | 2.106e-11 | |
| Glyma.07G071800 | hypothetical protein | AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein | 1 | Chr07:6523253–6526707 (+) | 2.235e-11 | |
| Glyma.07G087700 | hypothetical protein | AT3G24495:MSH7:MUTS homolog 7 | 1 | Chr07:8111751–8121053 (+) | 5.403e-11 | |
| Glyma.07G091400 | COL21 | CONSTANS-like zinc finger protein | AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein | 1 | Chr07:8539101–8547001 (+) | 4.51e-11 |
| Glyma.07G100400 | hypothetical protein | AT3G18050:AT3G18050:GPI-anchored protein | 1 | Chr07:9523110–9526319 (+) | 3.968e-11 | |
| Glyma.08G122000 | hypothetical protein | AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein | 1 | Chr08:9397717–9410004 (+) | 3.253e-11 | |
| Glyma.08G296900 | hypothetical protein | NA | 1 | Chr08:41297891–41301852 (+) | 9.281e-11 | |
| Glyma.09G082000 | hypothetical protein | NA | 1 | Chr09:9638564–9650178 (+) | 7.422e-12 | |
| Glyma.09G084300 | hypothetical protein | AT2G34680:AIR9:Outer arm dynein light chain 1 protein | 1 | Chr09:10129602–10197250 (-) | 2.902e-11 | |
| Glyma.09G200300 | hypothetical protein | NA | 1 | Chr09:42466263–42471449 (+) | 1.768e-11 | |
| Glyma.09G202900 | hypothetical protein | AT5G10560:AT5G10560:Glycosyl hydrolase family protein | 1 | Chr09:42685911–42690981 (-) | 1.483e-14 | |
| Glyma.09G237700 | hypothetical protein | AT4G21680:NRT1.8:NITRATE TRANSPORTER 1.8 | 1 | Chr09:45948581–45953681 (-) | 4.199e-11 | |
| Glyma.09G275500 | hypothetical protein | NA | 1 | Chr09:49105837–49106989 (+) | 8.978e-11 | |
| Glyma.10G028500 | hypothetical protein | NA | 1 | Chr10:2476846–2478953 (+) | 4.384e-12 | |
| Glyma.10G028700 | hypothetical protein | AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain | 1 | Chr10:2485817–2497071 (-) | 4.384e-12 | |
| Glyma.10G078700 | hypothetical protein | NA | 1 | Chr10:8882318–8903950 (+) | 3.614e-14 | |
| Glyma.10G079100 | hypothetical protein | NA | 1 | Chr10:8960669–8962364 (-) | 3.614e-14 | |
| Glyma.10G079800 | hypothetical protein | NA | 1 | Chr10:9223520–9228511 (-) | 3.614e-14 | |
| Glyma.10G080000 | hypothetical protein | AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… | 1 | Chr10:9258476–9260697 (-) | 3.614e-14 | |
| Glyma.10G081200 | hypothetical protein | NA | 1 | Chr10:9600771–9603988 (-) | 1.752e-14 | |
| Glyma.10G257500 | hypothetical protein | NA | 1 | Chr10:48386988–48389180 (-) | 4.164e-11 | |
| Glyma.11G127100 | hypothetical protein | AT1G06040:STO:B-box zinc finger family protein | 1 | Chr11:9656242–9659517 (+) | 7.964e-11 | |
| Glyma.11G127200 | hypothetical protein | AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein | 1 | Chr11:9660434–9665570 (-) | 7.964e-11 | |
| Glyma.11G127300 | hypothetical protein | AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein | 1 | Chr11:9667918–9671917 (-) | 7.964e-11 | |
| Glyma.12G114500 | hypothetical protein | AT4G22930:PYR4:pyrimidin 4 | 1 | Chr12:11396572–11400825 (-) | 2.175e-12 | |
| Glyma.12G114900 | hypothetical protein | NA | 1 | Chr12:11457987–11462951 (-) | 2.175e-12 | |
| Glyma.12G196800 | hypothetical protein | AT4G15180:SDG2:SET domain protein 2 | 1 | Chr12:35784957–35801339 (+) | 6.558e-11 | |
| Glyma.12G197500 | hypothetical protein | NA | 1 | Chr12:35869162–35874097 (+) | 6.558e-11 | |
| Glyma.12G197800 | hypothetical protein | NA | 1 | Chr12:35892655–35896825 (-) | 6.558e-11 | |
| Glyma.12G228300 | hypothetical protein | AT3G15030:TCP4:TCP family transcription factor 4 | 1 | Chr12:38813527–38816237 (-) | 2.348e-11 | |
| Glyma.12G236500 | hypothetical protein | NA | 1 | Chr12:39528803–39534614 (-) | 7.04e-11 | |
| Glyma.13G134300 | hypothetical protein | NA | 1 | Chr13:24664171–24665742 (-) | 7.891e-12 | |
| Glyma.13G134500 | hypothetical protein | AT3G09560:PAH1:Lipin family protein | 1 | Chr13:24696109–24705068 (-) | 3.767e-12 | |
| Glyma.13G135300 | hypothetical protein | NA | 1 | Chr13:24770681–24773826 (+) | 7.919e-12 | |
| Glyma.13G135400 | hypothetical protein | AT5G12130:PDE149:integral membrane TerC family protein | 1 | Chr13:24786242–24791938 (+) | 7.918e-12 | |
| Glyma.13G135500 | hypothetical protein | AT5G02780:GSTL1:glutathione transferase lambda 1 | 1 | Chr13:24798567–24801567 (+) | 4.095e-11 | |
| Glyma.14G068100 | hypothetical protein | AT3G12550:FDM3:XH/XS domain-containing protein | 1 | Chr14:5701618–5711043 (-) | 3.457e-12 | |
| Glyma.14G068500 | hypothetical protein | NA | 1 | Chr14:5741909–5745574 (-) | 9.732e-14 | |
| Glyma.14G069500 | hypothetical protein | AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 | 1 | Chr14:5822246–5825628 (-) | 2.023e-12 | |
| Glyma.14G094900 | hypothetical protein | AT1G60960:IRT3:iron regulated transporter 3 | 1 | Chr14:8824846–8827258 (-) | 1.026e-11 | |
| Glyma.15G124000 | hypothetical protein | NA | 1 | Chr15:9845097–9849312 (-) | 3.239e-12 | |
| Glyma.15G124500 | MLO-like protein 13 | AT4G24250:MLO13:Seven transmembrane MLO family protein | 1 | Chr15:9888761–9894068 (-) | 2.232e-14 | |
| Glyma.15G141100 | hypothetical protein | NA | 1 | Chr15:11554310–11555089 (+) | 2.29e-11 | |
| Glyma.15G275100 | hypothetical protein | AT5G42470:AT5G42470:BRCA1-A complex subunit BRE-like protein | 1 | Chr15:51350998–51355557 (-) | 1.256e-11 | |
| Glyma.16G105700 | hypothetical protein | NA | 1 | Chr16:21404554–21412265 (-) | 2.106e-11 | |
| Glyma.16G105800 | hypothetical protein | NA | 1 | Chr16:21409016–21412087 (-) | 2.106e-11 | |
| Glyma.16G106200 | hypothetical protein | NA | 1 | Chr16:21463300–21469532 (+) | 2.106e-11 | |
| Glyma.16G106300 | hypothetical protein | AT5G23900:AT5G23900:Ribosomal protein L13e family protein | 1 | Chr16:21495147–21497932 (+) | 9.694e-11 | |
| Glyma.16G111200 | hypothetical protein | AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) | 1 | Chr16:24455709–24466236 (+) | 8.472e-11 | |
| Glyma.16G111400 | hypothetical protein | AT4G35510:AT4G35510:PHD finger-like protein | 1 | Chr16:24546422–24549336 (+) | 2.926e-11 | |
| Glyma.16G116500 | hypothetical protein | AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein | 1 | Chr16:26057276–26069534 (+) | 4.3e-11 | |
| Glyma.16G117400 | hypothetical protein | NA | 1 | Chr16:26234552–26238233 (-) | 1.736e-11 | |
| Glyma.16G179800 | hypothetical protein | AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein | 1 | Chr16:34022480–34027055 (-) | 4.213e-12 | |
| Glyma.16G208500 | EIF6 | AT3G55620:eIF6A:Translation initiation factor IF6 | 1 | Chr16:36806718–36809299 (+) | 7.78e-11 | |
| Glyma.16G209300 | hypothetical protein | NA | 1 | Chr16:36856833–36863994 (-) | 8.504e-11 | |
| Glyma.19G011600 | hypothetical protein | NA | 1 | Chr19:1111789–1116419 (+) | 9.81e-12 | |
| Glyma.19G011900 | hypothetical protein | AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… | 1 | Chr19:1148510–1149495 (+) | 9.476e-11 | |
| Glyma.19G012100 | hypothetical protein | AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 | 1 | Chr19:1155711–1161298 (-) | 3.811e-11 | |
| Glyma.19G012300 | hypothetical protein | NA | 1 | Chr19:1165111–1173031 (-) | 3.811e-11 | |
| Glyma.19G022500 | hypothetical protein | AT5G15230:GASA4:GAST1 protein homolog 4 | 1 | Chr19:2574642–2577346 (+) | 6.558e-11 | |
| Glyma.20G235300 | hypothetical protein | AT1G09060:AT1G09060:JmjC domain protein JMJ24 | 1 | Chr20:46790436–46798140 (-) | 5.957e-11 | |
| Glyma.20G235400 | hypothetical protein | AT4G34910:AT4G34910:P-loop containing nucleoside triphosphate hydrolases superfamily protein | 1 | Chr20:46801199–46803834 (-) | 5.957e-11 |