Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P40277

Metabolite ID
P40277
Deionized mass
614.3764 Da
Average m/z
615.3867
Average RT
20.0745
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
93
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

93 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.881e-12
Glyma.16G114900 hypothetical protein NA 4Chr16:25456379–25485759 (+)7.293e-16
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.419e-12
Glyma.15G192700 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 3Chr15:21029024–21058079 (-)6.353e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)4.165e-17
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.381e-13
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.692e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.692e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.941e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.724e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.724e-13
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)2.674e-16
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)5.727e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.419e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)9.286e-14
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)2.029e-12
Glyma.01G018000 hypothetical protein NA 1Chr01:1736217–1737749 (-)4.861e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.319e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.319e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.402e-12
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)2.035e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.507e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.638e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.638e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.108e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.817e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.817e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.817e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.036e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.853e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.756e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.538e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.538e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.538e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.579e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.579e-14
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.317e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)6.942e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.692e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.692e-13
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)6.863e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.692e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)3.092e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)3.092e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.666e-14
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.886e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.446e-15
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)3.828e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)3.828e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.807e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.807e-14
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.697e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.941e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.598e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.845e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.511e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.264e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.264e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.724e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.251e-11
Glyma.15G192400 hypothetical protein AT5G49150:GEX2:gamete expressed 2 1Chr15:20964449–20974340 (+)6.353e-11
Glyma.15G192900 hypothetical protein NA 1Chr15:21108370–21110353 (+)6.353e-11
Glyma.15G212800 hypothetical protein AT4G16340:SPK1:guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein 1Chr15:33408140–33467420 (+)1.852e-14
Glyma.15G232700 hypothetical protein NA 1Chr15:43725286–43732237 (+)3.671e-11
Glyma.15G233600 hypothetical protein NA 1Chr15:43971478–43972713 (+)7.399e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.881e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)2.324e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)4.031e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)7.293e-16
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)7.293e-16
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)7.293e-16
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)7.293e-16
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)4.474e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.493e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)4.874e-14
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)5.158e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.381e-13
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.381e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.693e-13
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)4.116e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.014e-12
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)3.87e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.952e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.952e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)2.117e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.965e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.965e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)6.116e-11
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 1Chr19:38632803–38635633 (+)2.406e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.679e-11
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)4.839e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.727e-12
Glyma.20G098600 hypothetical protein AT4G01470:TIP1;3:tonoplast intrinsic protein 1;3 1Chr20:34184591–34191923 (+)6.59e-12