P39997
Metabolite ID
P39997
Deionized mass
876.4834 Da
Average m/z
877.4912
Average RT
19.8678
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
71
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
71 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.16G111500 | hypothetical protein | AT4G35500:AT4G35500:Protein kinase superfamily protein | 4 | Chr16:24626024–24635513 (+) | 1.806e-13 | |
| Glyma.19G027000 | hypothetical protein | NA | 4 | Chr19:3335896–3343744 (+) | 1.402e-11 | |
| Glyma.15G192700 | hypothetical protein | AT2G34680:AIR9:Outer arm dynein light chain 1 protein | 3 | Chr15:21029024–21058079 (-) | 2.463e-13 | |
| Glyma.16G114900 | hypothetical protein | NA | 3 | Chr16:25456379–25485759 (+) | 6.431e-13 | |
| Glyma.16G118400 | hypothetical protein | AT2G17190:AT2G17190:ubiquitin family protein | 3 | Chr16:26356863–26371741 (-) | 4.311e-11 | |
| Glyma.03G135200 | hypothetical protein | NA | 2 | Chr03:35070964–35078620 (+) | 1.274e-11 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 2 | Chr12:36473422–36498915 (+) | 2.836e-12 | |
| Glyma.16G118100 | hypothetical protein | AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein | 2 | Chr16:26324650–26336836 (+) | 5.704e-14 | |
| Glyma.18G196200 | hypothetical protein | AT3G09100:AT3G09100:mRNA capping enzyme family protein | 2 | Chr18:47102746–47129707 (+) | 3.951e-13 | |
| Glyma.19G026600 | hypothetical protein | AT4G13700:PAP23:purple acid phosphatase 23 | 2 | Chr19:3303658–3312907 (-) | 1.402e-11 | |
| Glyma.19G029600 | hypothetical protein | NA | 2 | Chr19:3681517–3690884 (-) | 2.367e-13 | |
| Glyma.19G029800 | hypothetical protein | NA | 2 | Chr19:3724518–3729860 (-) | 1.842e-11 | |
| Glyma.01G021700 | hypothetical protein | NA | 1 | Chr01:2197811–2200232 (+) | 3.536e-11 | |
| Glyma.01G022000 | hypothetical protein | NA | 1 | Chr01:2209688–2210849 (-) | 3.536e-11 | |
| Glyma.01G022200 | hypothetical protein | NA | 1 | Chr01:2212834–2213622 (+) | 3.536e-11 | |
| Glyma.03G135300 | hypothetical protein | NA | 1 | Chr03:35092248–35097578 (+) | 1.871e-11 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 3.605e-13 | |
| Glyma.06G112300 | hypothetical protein | AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase | 1 | Chr06:9113982–9118848 (-) | 3.145e-12 | |
| Glyma.06G112600 | hypothetical protein | AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein | 1 | Chr06:9134358–9144986 (+) | 3.145e-12 | |
| Glyma.06G112700 | hypothetical protein | AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein | 1 | Chr06:9156973–9158659 (+) | 3.145e-12 | |
| Glyma.06G125200 | hypothetical protein | AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 | 1 | Chr06:10209787–10215982 (+) | 3.112e-12 | |
| Glyma.06G125300 | hypothetical protein | AT5G24105:AGP41:arabinogalactan protein 41 | 1 | Chr06:10216506–10218901 (-) | 3.112e-12 | |
| Glyma.06G317100 | hypothetical protein | AT5G61520:AT5G61520:Major facilitator superfamily protein | 1 | Chr06:50586679–50589765 (+) | 1.576e-11 | |
| Glyma.07G017600 | hypothetical protein | NA | 1 | Chr07:1415837–1422680 (+) | 2.333e-12 | |
| Glyma.08G107700 | RHG4 | receptor-like kinase RHG4 | NA | 1 | Chr08:8284689–8288765 (+) | 1.913e-11 |
| Glyma.08G107800 | AK-HSDH | aspartokinase-homoserine dehydrogenase | AT4G19710:AK-HSDH II:aspartate kinase-homoserine dehydrogenase ii | 1 | Chr08:8296196–8307328 (-) | 2.297e-11 |
| Glyma.08G210200 | hypothetical protein | NA | 1 | Chr08:17010526–17012557 (+) | 6.656e-13 | |
| Glyma.08G210300 | hypothetical protein | NA | 1 | Chr08:17011623–17012548 (-) | 6.656e-13 | |
| Glyma.08G211800 | hypothetical protein | NA | 1 | Chr08:17104514–17105442 (-) | 1.341e-15 | |
| Glyma.09G062900 | hypothetical protein | NA | 1 | Chr09:6004419–6011041 (+) | 3.298e-14 | |
| Glyma.10G005300 | hypothetical protein | AT5G46050:PTR3:peptide transporter 3 | 1 | Chr10:535249–541722 (+) | 6.271e-11 | |
| Glyma.10G005400 | hypothetical protein | AT5G46040:AT5G46040:Major facilitator superfamily protein | 1 | Chr10:545269–550554 (+) | 6.271e-11 | |
| Glyma.10G006000 | hypothetical protein | NA | 1 | Chr10:596042–600044 (-) | 6.271e-11 | |
| Glyma.10G006500 | hypothetical protein | AT5G43330:c-NAD-MDH2:Lactate/malate dehydrogenase family protein | 1 | Chr10:633423–637181 (+) | 6.271e-11 | |
| Glyma.11G095100 | hypothetical protein | NA | 1 | Chr11:7212438–7214276 (-) | 4.636e-11 | |
| Glyma.12G203300 | hypothetical protein | AT4G03430:EMB2770:pre-mRNA splicing factor-like protein | 1 | Chr12:36371465–36377700 (-) | 8.003e-11 | |
| Glyma.12G203600 | EXPB8 | AT2G20750:EXPB1:expansin B1 | 1 | Chr12:36390283–36394245 (-) | 6.623e-11 | |
| Glyma.12G203700 | hypothetical protein | AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase | 1 | Chr12:36406747–36413696 (+) | 6.271e-11 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 2.836e-12 | |
| Glyma.12G204600 | hypothetical protein | AT4G28310:AT4G28310:microtubule-associated protein | 1 | Chr12:36504234–36505245 (+) | 7.675e-11 | |
| Glyma.12G205900 | hypothetical protein | NA | 1 | Chr12:36622011–36625824 (+) | 9.411e-11 | |
| Glyma.13G095000 | hypothetical protein | NA | 1 | Chr13:21005327–21006774 (-) | 1.497e-12 | |
| Glyma.13G237900 | hypothetical protein | NA | 1 | Chr13:34809361–34816888 (-) | 9.328e-12 | |
| Glyma.15G191500 | hypothetical protein | AT1G30800:AT1G30800:Fasciclin-like arabinogalactan family protein | 1 | Chr15:20695259–20696664 (+) | 8.789e-14 | |
| Glyma.15G191700 | hypothetical protein | NA | 1 | Chr15:20773059–20773940 (-) | 1.351e-11 | |
| Glyma.15G192400 | hypothetical protein | AT5G49150:GEX2:gamete expressed 2 | 1 | Chr15:20964449–20974340 (+) | 2.463e-13 | |
| Glyma.15G192900 | hypothetical protein | NA | 1 | Chr15:21108370–21110353 (+) | 2.463e-13 | |
| Glyma.15G212800 | hypothetical protein | AT4G16340:SPK1:guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein | 1 | Chr15:33408140–33467420 (+) | 4.127e-19 | |
| Glyma.15G216700 | hypothetical protein | NA | 1 | Chr15:35649229–35652466 (-) | 3.493e-12 | |
| Glyma.15G216900 | hypothetical protein | NA | 1 | Chr15:35680524–35686654 (-) | 3.493e-12 | |
| Glyma.15G217100 | hypothetical protein | NA | 1 | Chr15:35830853–35832075 (-) | 3.493e-12 | |
| Glyma.15G232600 | hypothetical protein | NA | 1 | Chr15:43719004–43723574 (+) | 4.431e-11 | |
| Glyma.15G232700 | hypothetical protein | NA | 1 | Chr15:43725286–43732237 (+) | 1.468e-11 | |
| Glyma.15G233600 | hypothetical protein | NA | 1 | Chr15:43971478–43972713 (+) | 8.769e-11 | |
| Glyma.16G111100 | hypothetical protein | NA | 1 | Chr16:24438458–24444801 (+) | 1.806e-13 | |
| Glyma.16G111400 | hypothetical protein | AT4G35510:AT4G35510:PHD finger-like protein | 1 | Chr16:24546422–24549336 (+) | 6.523e-12 | |
| Glyma.16G115300 | hypothetical protein | NA | 1 | Chr16:25584135–25585667 (+) | 6.431e-13 | |
| Glyma.16G115400 | hypothetical protein | NA | 1 | Chr16:25604547–25606360 (+) | 6.431e-13 | |
| Glyma.16G115500 | hypothetical protein | NA | 1 | Chr16:25622503–25630816 (+) | 6.431e-13 | |
| Glyma.16G115600 | hypothetical protein | AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein | 1 | Chr16:25661245–25664376 (-) | 6.431e-13 | |
| Glyma.16G116500 | hypothetical protein | AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein | 1 | Chr16:26057276–26069534 (+) | 1.901e-11 | |
| Glyma.16G117400 | hypothetical protein | NA | 1 | Chr16:26234552–26238233 (-) | 2.165e-13 | |
| Glyma.16G118200 | hypothetical protein | NA | 1 | Chr16:26337169–26338323 (+) | 4.311e-11 | |
| Glyma.16G118600 | hypothetical protein | NA | 1 | Chr16:26442194–26445922 (+) | 4.311e-11 | |
| Glyma.16G119400 | hypothetical protein | NA | 1 | Chr16:26684278–26687087 (+) | 2.855e-11 | |
| Glyma.17G121800 | hypothetical protein | AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 | 1 | Chr17:9746590–9748712 (+) | 3.783e-11 | |
| Glyma.18G112600 | hypothetical protein | NA | 1 | Chr18:13398219–13405422 (+) | 1.059e-11 | |
| Glyma.18G201700 | hypothetical protein | NA | 1 | Chr18:48175554–48180264 (+) | 1.355e-11 | |
| Glyma.19G012100 | hypothetical protein | AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 | 1 | Chr19:1155711–1161298 (-) | 4.873e-11 | |
| Glyma.19G012300 | hypothetical protein | NA | 1 | Chr19:1165111–1173031 (-) | 4.873e-11 | |
| Glyma.20G019800 | hypothetical protein | AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein | 1 | Chr20:2051817–2057262 (+) | 1.212e-11 |