Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39983

Metabolite ID
P39983
Deionized mass
966.4177 Da
Average m/z
484.2178
Average RT
19.8600
Adduct
[M+2H]2+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)2.173e-12
Glyma.15G216700 hypothetical protein NA 3Chr15:35649229–35652466 (-)2.776e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)3.309e-12
Glyma.15G216900 hypothetical protein NA 2Chr15:35680524–35686654 (-)2.776e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)8.286e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.719e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)1.927e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.966e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.966e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.966e-11
Glyma.05G221700 hypothetical protein NA 1Chr05:40115849–40120124 (+)1.362e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.095e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.044e-12
Glyma.06G126300 hypothetical protein NA 1Chr06:10331312–10341252 (-)4.079e-12
Glyma.06G126400 hypothetical protein AT5G53150:AT5G53150:DnaJ heat shock amino-terminal domain protein 1Chr06:10356650–10362151 (-)2.908e-13
Glyma.06G126700 hypothetical protein AT5G53120:SPDS3:spermidine synthase 3 1Chr06:10384771–10389578 (-)4.429e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)9.584e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)9.584e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.497e-11
Glyma.08G142200 hypothetical protein NA 1Chr08:10833827–10834390 (-)5.606e-11
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 1Chr08:10843433–10846761 (-)5.606e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.033e-11
Glyma.15G212800 hypothetical protein AT4G16340:SPK1:guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein 1Chr15:33408140–33467420 (+)7.62e-11
Glyma.15G216800 hypothetical protein NA 1Chr15:35673556–35678305 (-)8.897e-11
Glyma.15G217100 hypothetical protein NA 1Chr15:35830853–35832075 (-)2.776e-12
Glyma.15G219200 hypothetical protein NA 1Chr15:37859579–37901021 (-)7.537e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)3.965e-11
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)2.173e-12
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)8.099e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)3.309e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)3.309e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)3.309e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)3.309e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.315e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.617e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.481e-12
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)8.081e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)8.081e-11
Glyma.18G072800 hypothetical protein AT1G55760:AT1G55760:BTB/POZ domain-containing protein 1Chr18:6873417–6878947 (-)1.643e-12
Glyma.18G200500 hypothetical protein AT3G51860:CAX3:cation exchanger 3 1Chr18:48016361–48020799 (-)4.105e-11
Glyma.20G106400 hypothetical protein AT5G23590:AT5G23590:DNAJ heat shock N-terminal domain-containing protein 1Chr20:34888699–34893605 (-)7.089e-12