Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39845

Metabolite ID
P39845
Deionized mass
1026.5333 Da
Average m/z
1027.5424
Average RT
19.7747
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
104
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

104 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.268e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.858e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)3.656e-15
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)6.045e-13
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 3Chr18:47102746–47129707 (+)4.229e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.52e-13
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 2Chr10:2485817–2497071 (-)4.727e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.685e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.685e-12
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)1.36e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)1.367e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)3.409e-15
Glyma.16G139000 hypothetical protein NA 2Chr16:29623540–29631451 (+)6.443e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.268e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.05e-12
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 2Chr20:34467936–34475476 (-)9.216e-12
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)1.75e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)1.75e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)3.037e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.969e-11
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)2.381e-11
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)4.004e-14
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.902e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)9.538e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)9.538e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.52e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.724e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.724e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.724e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)2.584e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)3.969e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.081e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.611e-18
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.611e-18
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)4.159e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.049e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)8.843e-12
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)8.622e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)8.622e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)9.525e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)9.525e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.834e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.57e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.57e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.57e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.57e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.752e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.82e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.82e-12
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)4.727e-11
Glyma.10G028600 hypothetical protein NA 1Chr10:2487313–2489838 (+)7.106e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.576e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.576e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.576e-11
Glyma.13G044300 hypothetical protein NA 1Chr13:13774555–13779250 (-)9.702e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.275e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.853e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.853e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.685e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.555e-11
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)4.613e-12
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)4.613e-12
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)1.112e-12
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)8.21e-12
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)4.244e-12
Glyma.15G049800 hypothetical protein NA 1Chr15:3927843–3933656 (-)5.65e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.527e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.923e-13
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)5.056e-12
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)6.939e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.367e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)3.221e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)4.004e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.858e-13
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.858e-13
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.858e-13
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.858e-13
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.473e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)1.649e-12
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)3.135e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)6.045e-13
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)6.045e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.383e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.784e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.951e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)6.486e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)5.059e-14
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.027e-14
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)7.848e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)5.186e-13
Glyma.16G156800 hypothetical protein NA 1Chr16:31700335–31703734 (-)5.043e-11
Glyma.16G157800 hypothetical protein NA 1Chr16:31832373–31834430 (-)2.463e-11
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)6.242e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.688e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)3.311e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)5.765e-11
Glyma.18G202100 hypothetical protein AT3G51850:CPK13:calcium-dependent protein kinase 13 1Chr18:48258271–48266554 (-)5.885e-11
Glyma.18G260700 hypothetical protein NA 1Chr18:54660451–54661757 (+)1.011e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)7.211e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.079e-11
Glyma.18G301600 hypothetical protein AT2G33490:AT2G33490:hydroxyproline-rich glycoprotein family protein 1Chr18:57939468–57945328 (+)9.675e-13
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)4.661e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.22e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.22e-13