Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39715

Metabolite ID
P39715
Deionized mass
1054.5351 Da
Average m/z
1055.5439
Average RT
19.7081
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
107
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

107 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G096800 hypothetical protein AT4G24460:CLT2:CRT (chloroquine-resistance transporter)-like transporter 2 4Chr04:8747857–8778229 (-)7.503e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)9.133e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)2.713e-14
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 3Chr03:5113019–5121557 (+)7.862e-21
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)5.833e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)3.832e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.845e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)3.538e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.141e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.497e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.745e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)5.362e-12
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 2Chr18:57674222–57678396 (+)1.021e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.861e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.476e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.852e-13
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)5.997e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)7.826e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.923e-13
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)1.317e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)8.022e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.492e-12
Glyma.04G096500 hypothetical protein NA 1Chr04:8664088–8675605 (+)7.503e-11
Glyma.04G096600 hypothetical protein AT1G58250:SAB:HYPERSENSITIVE TO PI STARVATION 4 1Chr04:8693806–8724007 (-)7.503e-11
Glyma.04G096900 hypothetical protein NA 1Chr04:8778953–8796458 (-)7.503e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.285e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.432e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.432e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.892e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.584e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.584e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.584e-13
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.304e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)7.964e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.588e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.463e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.201e-20
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.536e-16
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.145e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.145e-15
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)4.869e-12
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)4.869e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.684e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.298e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.99e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)9.989e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.141e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.141e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.141e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.141e-12
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)3.34e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)9.803e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)9.803e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.275e-14
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)4.191e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.558e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.868e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)4.224e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)4.224e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)1.34e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)3.569e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)3.569e-11
Glyma.12G001400 hypothetical protein AT1G72090:AT1G72090:Methylthiotransferase 1Chr12:113763–118480 (+)8.284e-11
Glyma.12G001600 PM27 seed maturation protein PM27 AT1G22600:AT1G22600:Late embryosis abundant protein (LEA) family protein__AT1G72100:AT1G72100:late embryosis abundant d… 1Chr12:127545–128932 (+)8.284e-11
Glyma.12G001700 hypothetical protein AT1G22570:AT1G22570:Major facilitator superfamily protein__AT1G22550:AT1G22550:Major facilitator superfamily protein 1Chr12:132389–134935 (+)8.284e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.084e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.084e-12
Glyma.13G044300 hypothetical protein NA 1Chr13:13774555–13779250 (-)9.272e-13
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)8.707e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.381e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.381e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.381e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)9.724e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.381e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.745e-11
Glyma.15G030100 hypothetical protein AT2G43290:MSS3:Calcium-binding EF-hand family protein__AT4G03290:AT4G03290:EF hand calcium-binding protein family 1Chr15:2420032–2426219 (+)7.442e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.56e-11
Glyma.15G139000 hypothetical protein NA 1Chr15:11314329–11317181 (-)5.025e-15
Glyma.15G140400 hypothetical protein NA 1Chr15:11495189–11495691 (+)2.944e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)9.289e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)2.983e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)9.133e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)9.758e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)3.93e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)7.127e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)3.832e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)3.832e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)3.832e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)3.832e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.619e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)3.538e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)3.538e-11
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)2.407e-12
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)2.693e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)5.813e-11
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)7.411e-11
Glyma.18G072800 hypothetical protein AT1G55760:AT1G55760:BTB/POZ domain-containing protein 1Chr18:6873417–6878947 (-)5.735e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)1.754e-12
Glyma.18G265500 hypothetical protein AT5G39250:AT5G39250:F-box family protein 1Chr18:55019514–55022070 (-)7.998e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)3.388e-12
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)2.218e-11
Glyma.18G301600 hypothetical protein AT2G33490:AT2G33490:hydroxyproline-rich glycoprotein family protein 1Chr18:57939468–57945328 (+)5.004e-11
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)4.06e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.554e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.554e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)6.119e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)3.199e-11