Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39607

Metabolite ID
P39607
Deionized mass
448.2081 Da
Average m/z
449.2147
Average RT
19.6470
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
102
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

102 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G147300 hypothetical protein NA 7Chr08:11238871–11242682 (+)5.746e-22
Glyma.02G121500 hypothetical protein NA 5Chr02:12065640–12082937 (+)1.231e-11
Glyma.08G145300 hypothetical protein AT5G64750:ABR1:Integrase-type DNA-binding superfamily protein 3Chr08:11041449–11043230 (-)2.433e-13
Glyma.08G145600 hypothetical protein AT5G64740:CESA6:cellulose synthase 6__AT4G39350:CESA2:cellulose synthase A2__AT5G09870:CESA5:cellulose synthase 5 3Chr08:11066152–11073328 (-)2.433e-13
Glyma.08G145700 hypothetical protein AT5G64730:AT5G64730:Transducin/WD40 repeat-like superfamily protein 3Chr08:11083230–11086950 (-)3.764e-16
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)1.03e-12
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 2Chr03:2124895–2135692 (-)4.902e-13
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)3.732e-12
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)1.76e-12
Glyma.08G141200 hypothetical protein NA 2Chr08:10789258–10792803 (-)2.197e-12
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 2Chr08:10843433–10846761 (-)9.491e-14
Glyma.08G143200 hypothetical protein AT4G39420:AT4G39420:spatacsin carboxy-terminus protein 2Chr08:10898111–10922975 (-)9.491e-14
Glyma.08G144000 hypothetical protein NA 2Chr08:10981530–10989743 (+)9.491e-14
Glyma.08G145400 hypothetical protein AT5G09880:AT5G09880:Splicing factor, CC1-like protein 2Chr08:11050835–11058461 (+)2.433e-13
Glyma.08G145500 hypothetical protein NA 2Chr08:11061447–11062601 (-)2.433e-13
Glyma.08G146100 hypothetical protein NA 2Chr08:11119305–11124078 (+)3.368e-16
Glyma.08G146200 hypothetical protein NA 2Chr08:11125789–11129806 (-)1.166e-13
Glyma.11G133300 hypothetical protein NA 2Chr11:10188790–10192565 (-)6.142e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)9.061e-11
Glyma.01G040000 hypothetical protein NA 1Chr01:4336374–4338196 (+)9.673e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)2.272e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)6.678e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)2.424e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)5.323e-13
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.381e-12
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)1.886e-13
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)1.886e-13
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)1.886e-13
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)1.886e-13
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)1.886e-13
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)1.886e-13
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)1.886e-13
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)1.03e-12
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)1.756e-11
Glyma.02G122100 hypothetical protein NA 1Chr02:12134374–12137612 (+)1.231e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)7.521e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)5.009e-13
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)1.61e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)4.796e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.104e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.961e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.187e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.187e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.187e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.548e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.548e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)9.801e-12
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)7.529e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)2.526e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.121e-11
Glyma.08G104600 hypothetical protein AT1G27930:AT1G27930:glucuronoxylan 4-O-methyltransferase-like protein (DUF579) 1Chr08:8045602–8047222 (-)7.576e-12
Glyma.08G109700 GmJ1 AT4G13830:J20:DNAJ-like 20 1Chr08:8419650–8422508 (+)3.3e-11
Glyma.08G111700 hypothetical protein NA 1Chr08:8604527–8606424 (-)1.772e-12
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)3.732e-12
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 1Chr08:9169843–9172229 (-)2.192e-11
Glyma.08G141500 hypothetical protein AT4G39540:SK2:shikimate kinase 2 1Chr08:10806339–10811196 (-)2.197e-12
Glyma.08G141800 hypothetical protein AT1G74050:AT1G74050:Ribosomal protein L6 family protein 1Chr08:10823835–10825767 (+)2.433e-13
Glyma.08G142700 hypothetical protein AT1G10500:CPISCA:chloroplast-localized ISCA-like protein 1Chr08:10857723–10860675 (+)2.584e-12
Glyma.08G143000 hypothetical protein AT3G57940:AT3G57940:GNAT acetyltransferase (DUF699)__AT1G10490:AT1G10490:GNAT acetyltransferase (DUF699) 1Chr08:10872816–10885213 (-)9.491e-14
Glyma.08G143400 hypothetical protein NA 1Chr08:10941737–10944154 (+)2.768e-11
Glyma.08G143700 hypothetical protein NA 1Chr08:10963025–10963671 (+)2.213e-11
Glyma.08G143900 hypothetical protein AT1G20580:AT1G20580:Small nuclear ribonucleoprotein family protein 1Chr08:10973479–10976014 (-)1.879e-11
Glyma.08G144600 hypothetical protein NA 1Chr08:10997491–11002758 (+)9.491e-14
Glyma.08G144700 hypothetical protein NA 1Chr08:11004138–11009322 (-)9.491e-14
Glyma.08G144900 hypothetical protein NA 1Chr08:11022996–11023930 (-)2.433e-13
Glyma.08G145000 hypothetical protein NA 1Chr08:11025299–11026023 (+)5.266e-12
Glyma.08G145100 hypothetical protein NA 1Chr08:11027960–11032612 (-)5.266e-12
Glyma.08G145900 hypothetical protein AT4G39330:CAD9:cinnamyl alcohol dehydrogenase 9 1Chr08:11092669–11096142 (-)3.764e-16
Glyma.08G146000 hypothetical protein AT5G09850:AT5G09850:Transcription elongation factor (TFIIS) family protein 1Chr08:11103557–11106499 (+)1.923e-14
Glyma.08G146300 hypothetical protein AT5G09820:AT5G09820:Plastid-lipid associated protein PAP / fibrillin family protein 1Chr08:11136129–11139057 (-)5.679e-14
Glyma.08G147200 hypothetical protein AT3G18710:PUB29:plant U-box 29__AT5G64660:CMPG2:CYS, MET, PRO, and GLY protein 2 1Chr08:11225587–11227445 (+)6.789e-22
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)3.887e-21
Glyma.08G147500 hypothetical protein AT3G18680:AT3G18680:Amino acid kinase family protein 1Chr08:11253074–11256505 (+)2.188e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)6.699e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)2.927e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)4.799e-12
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)2.583e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)8.91e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.46e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.06e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)9.061e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.498e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)8.498e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)8.498e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.832e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)4.624e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)4.624e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)4.624e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)9.425e-13
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)2.163e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.954e-12
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)1.947e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)2.423e-13
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)2.423e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.797e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.797e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.797e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)9.012e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)9.012e-11
Glyma.18G200500 hypothetical protein AT3G51860:CAX3:cation exchanger 3 1Chr18:48016361–48020799 (-)6.922e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.071e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.071e-11