Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P38699

Metabolite ID
P38699
Deionized mass
195.1319 Da
Average m/z
196.1390
Average RT
19.1594
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
73
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

73 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.629e-12
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)7.587e-13
Glyma.05G196800 hypothetical protein NA 2Chr05:38102881–38111409 (-)1.059e-11
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)4.07e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.382e-11
Glyma.15G024500 hypothetical protein AT3G13810:IDD11:indeterminate(ID)-domain 11 2Chr15:1970818–1978651 (-)4.405e-13
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)7.121e-12
Glyma.16G172400 hypothetical protein AT3G59140:ABCC10:multidrug resistance-associated protein 14 2Chr16:33304594–33319789 (+)3.459e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.629e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.725e-12
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)2.634e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.564e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.174e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)7.474e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)7.474e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.96e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.673e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.673e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.673e-11
Glyma.05G196700 hypothetical protein AT5G08660:AT5G08660:D-lactate dehydrogenase (DUF668) 1Chr05:38092324–38100286 (+)1.059e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.273e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)3.184e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)3.184e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)3.184e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.647e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.647e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)6.103e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)9.251e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)9.251e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)3.134e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)4.972e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)4.972e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)5.767e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.382e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.382e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.382e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.382e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)4.41e-12
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)4.41e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.217e-11
Glyma.09G068500 PHD6 PHD finger protein GmPHD6 AT5G20510:AL5:alfin-like 5 1Chr09:6937814–6941687 (+)4.368e-12
Glyma.09G069400 hypothetical protein NA 1Chr09:7055066–7058933 (+)1.778e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)9.84e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.66e-11
Glyma.09G209800 hypothetical protein NA 1Chr09:43411309–43411773 (+)4.847e-12
Glyma.09G209900 hypothetical protein AT1G31930:XLG3:extra-large GTP-binding protein 3 1Chr09:43412726–43419532 (+)3.542e-12
Glyma.09G210000 hypothetical protein AT5G45620:AT5G45620:Proteasome component (PCI) domain protein 1Chr09:43422744–43428344 (-)4.847e-12
Glyma.09G210700 hypothetical protein AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr09:43466944–43471858 (-)2.793e-12
Glyma.09G210800 hypothetical protein AT1G32050:SCAMP5:SCAMP family protein 1Chr09:43476243–43482337 (+)7.067e-11
Glyma.09G215000 hypothetical protein AT3G19040:HAF2:histone acetyltransferase of the TAFII250 family 2__AT1G32750:HAF01:HAC13 protein (HAC13) 1Chr09:43810976–43837663 (+)7.803e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)1.084e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)5.165e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)5.165e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)5.165e-11
Glyma.15G024400 hypothetical protein AT1G17620:AT1G17620:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:1962152–1963820 (+)2.246e-11
Glyma.15G024900 hypothetical protein AT3G13780:AT3G13780:SMAD/FHA domain-containing protein 1Chr15:2017155–2019411 (+)4.405e-13
Glyma.15G025300 hypothetical protein NA 1Chr15:2042908–2050348 (+)4.405e-13
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)7.322e-11
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)4.735e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.645e-11
Glyma.15G172900 hypothetical protein AT5G57070:AT5G57070:hydroxyproline-rich glycoprotein family protein 1Chr15:15847563–15849835 (+)4.202e-12
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)1.44e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.921e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.282e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.519e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)2.358e-11
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)7.596e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.343e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)9.725e-12
Glyma.18G200500 hypothetical protein AT3G51860:CAX3:cation exchanger 3 1Chr18:48016361–48020799 (-)2.353e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.44e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.44e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)3.207e-11