Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P38603

Metabolite ID
P38603
Deionized mass
593.2741 Da
Average m/z
594.2827
Average RT
19.0956
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)4.932e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.717e-12
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 2Chr07:9523110–9526319 (+)8.5e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.409e-13
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)4.058e-11
Glyma.16G105100 hypothetical protein NA 2Chr16:21259552–21267517 (-)8.382e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.527e-11
Glyma.03G142200 hypothetical protein AT3G47370:AT3G47370:Ribosomal protein S10p/S20e family protein 1Chr03:35800933–35802532 (+)8.336e-11
Glyma.03G145600 hypothetical protein NA 1Chr03:36103398–36107031 (+)4.312e-11
Glyma.03G145700 hypothetical protein AT3G58030:AT3G58030:RING/U-box superfamily protein 1Chr03:36109689–36112241 (+)4.085e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)2.307e-11
Glyma.03G171500 hypothetical protein AT3G53720:CHX20:cation/H+ exchanger 20 1Chr03:38601039–38606103 (+)6.768e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.823e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.163e-13
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)3.007e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.717e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.717e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)4.138e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)9.371e-11
Glyma.07G097000 hypothetical protein AT1G19670:CLH1:chlorophyllase 1 1Chr07:9118318–9120182 (-)3.76e-11
Glyma.07G101800 hypothetical protein NA 1Chr07:9697246–9703577 (+)8.069e-11
Glyma.09G053800 hypothetical protein NA 1Chr09:4737413–4755632 (-)8.966e-11
Glyma.09G066400 hypothetical protein AT4G29790:AT4G29790:serine/arginine repetitive matrix protein 1Chr09:6509441–6524102 (+)5.876e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)9.359e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.985e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.723e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)8.064e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)5.749e-11
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)8.51e-12
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)8.51e-12
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)5.688e-12
Glyma.15G048800 hypothetical protein AT2G01080:AT2G01080:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr15:3852038–3855379 (+)1.619e-13
Glyma.15G049000 hypothetical protein NA 1Chr15:3866108–3867740 (+)1.665e-11
Glyma.15G049800 hypothetical protein NA 1Chr15:3927843–3933656 (-)4.699e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.212e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.155e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.106e-13
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.285e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.601e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)4.932e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)3.579e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.331e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.315e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.909e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)7.013e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)6.429e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.731e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.731e-11
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)1.208e-11
Glyma.18G284600 hypothetical protein AT1G24280:G6PD3:glucose-6-phosphate dehydrogenase 3__AT5G13110:G6PD2:glucose-6-phosphate dehydrogenase 2 1Chr18:56525770–56534088 (+)6.755e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.17e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.17e-11