Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P32883

Metabolite ID
P32883
Deionized mass
633.3895 Da
Average m/z
634.3964
Average RT
16.8315
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
129
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

129 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.391e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)3.855e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.178e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)9.701e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.773e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.773e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.773e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.575e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)6.444e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.229e-13
Glyma.14G171400 hypothetical protein NA 2Chr14:42398866–42404627 (+)1.654e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)8.004e-13
Glyma.15G263500 hypothetical protein AT1G79440:ALDH5F1:aldehyde dehydrogenase 5F1 2Chr15:49664672–49682418 (+)7.284e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)6.824e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.068e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)6.129e-12
Glyma.02G203800 hypothetical protein AT4G30935:WRKY32:WRKY DNA-binding protein 32 1Chr02:38920714–38930381 (+)7.787e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)2.689e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.741e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)8.124e-15
Glyma.02G289000 hypothetical protein AT5G54800:GPT1:glucose 6-phosphate/phosphate translocator 1 1Chr02:46898427–46902989 (+)5.23e-11
Glyma.02G294000 hypothetical protein NA 1Chr02:47237993–47240495 (+)8.286e-12
Glyma.02G294200 hypothetical protein AT3G20290:EHD1:EPS15 homology domain 1 1Chr02:47256480–47263517 (+)1.709e-11
Glyma.02G294500 hypothetical protein AT5G50850:MAB1:Transketolase family protein 1Chr02:47272683–47277831 (-)1.501e-12
Glyma.02G294900 hypothetical protein AT5G55220:AT5G55220:trigger factor type chaperone family protein 1Chr02:47300149–47306133 (+)8.451e-12
Glyma.02G295000 hypothetical protein AT4G26770:AT4G26770:Phosphatidate cytidylyltransferase family protein 1Chr02:47306160–47312036 (-)8.451e-12
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)6.68e-13
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)6.679e-13
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)6.565e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)3.009e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.109e-13
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.172e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)8.764e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.864e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.864e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.622e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.433e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.433e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.433e-12
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)3.449e-15
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.905e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)8.736e-17
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)2.98e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.481e-13
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.47e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.204e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.204e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)9.375e-14
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.039e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)9.375e-14
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)9.375e-14
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.039e-11
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)1.9e-13
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.391e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.391e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)7.35e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)4.911e-13
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)4.507e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)9.701e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.701e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.701e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.701e-13
Glyma.08G124200 hypothetical protein AT1G30500:NF-YA7:nuclear factor Y, subunit A7 1Chr08:9531363–9535558 (+)3.068e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)4.836e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)4.836e-12
Glyma.08G211100 GLYI-9 putative lactoylglutathione lyase AT1G80160:GLYI7:Lactoylglutathione lyase / glyoxalase I family protein 1Chr08:17046316–17048640 (-)6.06e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)4.895e-15
Glyma.08G220200 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr08:17889781–17898867 (+)4.409e-11
Glyma.09G065900 hypothetical protein NA 1Chr09:6419980–6421918 (+)7.015e-11
Glyma.09G066000 hypothetical protein NA 1Chr09:6431656–6439981 (-)7.015e-11
Glyma.09G066200 hypothetical protein AT5G57030:LUT2:Lycopene beta/epsilon cyclase protein 1Chr09:6475361–6486120 (+)7.015e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.773e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.773e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.773e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.773e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.773e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.023e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)6.995e-11
Glyma.11G065000 hypothetical protein AT4G36730:GBF1:G-box binding factor 1 1Chr11:4916855–4922192 (+)5.566e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.737e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.737e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.614e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.614e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)8.383e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.912e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.788e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)6.266e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)6.555e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.444e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.698e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.698e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.698e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.337e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)5.417e-11
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)5.912e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.624e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.624e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.624e-11
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)1.116e-12
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)4.022e-15
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)4.022e-15
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.277e-14
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)1.654e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)8.004e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.504e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.277e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.504e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.505e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.461e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)6.824e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)3.855e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)3.855e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)3.855e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)3.855e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)2.868e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)8.992e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.523e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.178e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.178e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.865e-14
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)2.883e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)5.031e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)5.031e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)1.955e-12
Glyma.18G050100 hypothetical protein NA 1Chr18:4323734–4329696 (+)8.622e-11
Glyma.18G243300 hypothetical protein AT3G24090:GFAT:putative glucosamine-fructose-6-phosphate aminotransferase 1Chr18:53151480–53157909 (+)7.026e-11
Glyma.19G195600 hypothetical protein AT3G52570:AT3G52570:alpha/beta-Hydrolases superfamily protein 1Chr19:45273343–45277374 (-)2.412e-12
Glyma.20G217100 hypothetical protein AT1G64640:ENODL8:early nodulin-like protein 8 1Chr20:45278452–45280126 (-)5.555e-11
Glyma.20G218100 hypothetical protein AT1G32900:GBSS1:UDP-Glycosyltransferase superfamily protein 1Chr20:45387265–45391879 (-)3.823e-12