Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P31729

Metabolite ID
P31729
Deionized mass
524.1860 Da
Average m/z
263.1009
Average RT
16.4218
Adduct
[M+2H]2+
Association scope
Overlapping genes only
Associated genes
93
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

93 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.208e-13
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)4.46e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)5.159e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.124e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)4.472e-11
Glyma.05G164700 hypothetical protein NA 2Chr05:35543931–35549196 (-)1.079e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.363e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)9.867e-11
Glyma.14G171400 hypothetical protein NA 2Chr14:42398866–42404627 (+)1.929e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.208e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)3.211e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)2.028e-11
Glyma.01G045600 hypothetical protein NA 1Chr01:5242432–5245038 (-)9.247e-11
Glyma.01G099100 hypothetical protein NA 1Chr01:33017228–33023840 (+)2.344e-11
Glyma.01G099600 hypothetical protein AT3G53930:AT3G53930:Protein kinase superfamily protein__AT2G37840:AT2G37840:Protein kinase superfamily protein 1Chr01:33115843–33125726 (-)2.344e-11
Glyma.01G099900 hypothetical protein NA 1Chr01:33275414–33282430 (+)2.344e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.032e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.032e-13
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.161e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.317e-14
Glyma.03G036800 TBP1 AT3G13445:TBP1:TATA binding protein 1 1Chr03:4472672–4477787 (-)1.365e-11
Glyma.03G037300 hypothetical protein NA 1Chr03:4566741–4573890 (+)2.532e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)1.986e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.119e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.948e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.916e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.916e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.319e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.688e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.688e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.688e-13
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)2.26e-12
Glyma.05G165200 hypothetical protein NA 1Chr05:35586701–35592272 (+)6.585e-11
Glyma.05G165300 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr05:35593651–35600917 (+)6.585e-11
Glyma.05G166000 hypothetical protein NA 1Chr05:35657133–35657621 (-)6.585e-11
Glyma.05G220900 hypothetical protein NA 1Chr05:40040654–40043504 (+)6.096e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)5.642e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.067e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.763e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.69e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.69e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.69e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.219e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.219e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)2.82e-14
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.436e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)8.261e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.363e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.363e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.363e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.363e-11
Glyma.08G183700 Fasciclin-like arabinogalactan protein 19 NA 1Chr08:14738283–14742033 (+)1.302e-11
Glyma.08G184300 hypothetical protein NA 1Chr08:14784345–14786953 (+)2.462e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.51e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)2.463e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)2.463e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.041e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.775e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.362e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.72e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.72e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.72e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.971e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.01e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)9.867e-11
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)1.929e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)7.534e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)7.534e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.433e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)4.471e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)4.471e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.915e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.849e-15
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)5.41e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.16e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.16e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.16e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.16e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)8.96e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)4.122e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.416e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)4.472e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)4.472e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.247e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.414e-14
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)9.707e-11
Glyma.18G179200 hypothetical protein NA 1Chr18:43222934–43228759 (-)2.769e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.449e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.449e-12
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)1.436e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)1.091e-12
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)4.571e-11
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)6.978e-12