Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30962

Metabolite ID
P30962
Deionized mass
258.0832 Da
Average m/z
259.0902
Average RT
16.1801
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
133
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

133 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G226300 hypothetical protein NA 4Chr18:51471540–51498344 (+)1.547e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.048e-12
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)9.636e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)2.201e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)7.73e-13
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)3.23e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)1.224e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)1.101e-13
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)1.112e-11
Glyma.07G058900 hypothetical protein NA 2Chr07:5268461–5272348 (+)7.297e-12
Glyma.07G059200 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 2Chr07:5284646–5293001 (-)7.297e-12
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)1.28e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)4.29e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.726e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.74e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.805e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.805e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)2.861e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)2.454e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.048e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.182e-11
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)6.139e-12
Glyma.01G014800 hypothetical protein NA 1Chr01:1459585–1464612 (+)2.921e-11
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 1Chr01:3821377–3825854 (-)9.636e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)4.004e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)6.017e-11
Glyma.01G153300 hypothetical protein AT5G45340:CYP707A3:cytochrome P450, family 707, subfamily A, polypeptide 3__AT4G19230:CYP707A1:cytochrome P450, family … 1Chr01:49049375–49052359 (-)1.19e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.373e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.373e-14
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.082e-12
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)5.042e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)6.167e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.509e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.566e-14
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)5.493e-12
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)3.082e-14
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)3.856e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.719e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.905e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.905e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.905e-12
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)1.809e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.943e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.656e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.208e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.502e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)7.082e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)5.852e-14
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)6.709e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)3.36e-12
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)5.853e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)5.854e-11
Glyma.07G059100 hypothetical protein NA 1Chr07:5282519–5283075 (-)7.297e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)7.004e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.769e-15
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)4.143e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)4.143e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)5.918e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)9.545e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)8.196e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)8.811e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.962e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.027e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.135e-15
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)6.329e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)4.035e-13
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)3.721e-11
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)3.721e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)5.417e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)4.098e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.961e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.961e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.961e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.961e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.716e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)6.413e-14
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)3.991e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)6.361e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)9.392e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)9.392e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)9.392e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.233e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.32e-15
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.32e-15
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.493e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.24e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.74e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)9.883e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)4.376e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)4.664e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.805e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.805e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.651e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.418e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)5.728e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.136e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.823e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.136e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.136e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.703e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.581e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)3.34e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)3.34e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)2.51e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.347e-11
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)8.452e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.95e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)6.147e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.641e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.641e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)8.867e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)8.867e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)2.111e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.389e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)7.458e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)8.493e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.152e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)2.413e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)6.541e-14
Glyma.18G231300 hypothetical protein AT3G61310:AT3G61310:AT hook motif DNA-binding family protein 1Chr18:51979095–51987062 (-)7.327e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)3.152e-12
Glyma.18G259000 hypothetical protein NA 1Chr18:54442402–54446789 (-)3.663e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)5.274e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.387e-11
Glyma.18G266200 hypothetical protein NA 1Chr18:55065716–55066843 (-)6.809e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)6.209e-12
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)2.49e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.454e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.422e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.422e-15
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)8.908e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)7.999e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.11e-14