Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30931

Metabolite ID
P30931
Deionized mass
500.2216 Da
Average m/z
501.2272
Average RT
16.1718
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
114
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

114 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.02G121500 hypothetical protein NA 5Chr02:12065640–12082937 (+)1.586e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.562e-12
Glyma.12G197600 hypothetical protein AT4G03210:XTH9:xyloglucan endotransglucosylase/hydrolase 9 3Chr12:35879106–35881779 (+)7.2e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)3.224e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)5.349e-11
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)4.795e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.16e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)3.208e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.249e-11
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)9.946e-13
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 2Chr12:37131153–37134096 (+)2.488e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.398e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.398e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.758e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.562e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.032e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)1.069e-11
Glyma.20G219100 hypothetical protein AT3G02830:ZFN1:zinc finger protein 1 2Chr20:45490419–45496014 (+)2.944e-11
Glyma.02G121600 hypothetical protein AT1G26310:CAL:K-box region and MADS-box transcription factor family protein 1Chr02:12084714–12089043 (+)8.101e-11
Glyma.02G125400 hypothetical protein AT1G68910:WIT2:WPP domain-interacting protein 2 1Chr02:12529368–12536281 (+)7.14e-11
Glyma.02G125700 hypothetical protein NA 1Chr02:12589185–12591860 (-)1.544e-12
Glyma.02G126300 hypothetical protein NA 1Chr02:12670653–12677305 (+)4.348e-11
Glyma.02G126400 hypothetical protein NA 1Chr02:12678071–12683492 (+)4.348e-11
Glyma.02G126800 hypothetical protein AT1G13580:LAG13:LAG1 longevity assurance-like protein__AT3G25540:LAG1:TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain co… 1Chr02:12771578–12777488 (+)4.348e-11
Glyma.02G127400 hypothetical protein AT1G26190:AT1G26190:Phosphoribulokinase / Uridine kinase family 1Chr02:12849745–12869066 (+)4.348e-11
Glyma.02G127600 hypothetical protein NA 1Chr02:12976382–12983547 (+)4.348e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)2.955e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.359e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.637e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.436e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)8.395e-12
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)1.584e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.151e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.56e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.19e-13
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)9.498e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.22e-11
Glyma.05G242300 hypothetical protein NA 1Chr05:41737333–41740427 (-)8.482e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)1.884e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.216e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.216e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.216e-11
Glyma.06G291300 hypothetical protein NA 1Chr06:48016841–48019943 (+)1.945e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)6.524e-16
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)7.43e-15
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)6.524e-16
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)6.524e-16
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)7.43e-15
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)4.545e-13
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)2.346e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)5.468e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)5.308e-12
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)5.308e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)3.537e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)3.208e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.249e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.249e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.249e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.249e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.55e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.352e-11
Glyma.09G011700 hypothetical protein NA 1Chr09:894858–897607 (-)2.507e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.13e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.789e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.365e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.365e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.365e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.365e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.729e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.433e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.282e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.282e-12
Glyma.12G196800 hypothetical protein AT4G15180:SDG2:SET domain protein 2 1Chr12:35784957–35801339 (+)7.2e-11
Glyma.12G197500 hypothetical protein NA 1Chr12:35869162–35874097 (+)7.2e-11
Glyma.12G197800 hypothetical protein NA 1Chr12:35892655–35896825 (-)7.2e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.216e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.216e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.052e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)3.807e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.375e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.375e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)7.905e-11
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)3.191e-11
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)2.516e-12
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)3.108e-12
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 1Chr13:14742455–14747878 (-)5.706e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.189e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.224e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.398e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.398e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.466e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)3.956e-11
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)5.042e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.011e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.011e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.363e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.861e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.362e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.363e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.349e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.349e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.349e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.349e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)9.984e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.367e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)9.711e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.65e-14
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.134e-11
Glyma.19G022500 hypothetical protein AT5G15230:GASA4:GAST1 protein homolog 4 1Chr19:2574642–2577346 (+)7.2e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.978e-12
Glyma.20G098200 hypothetical protein AT1G56345:AT1G56345:Pseudouridine synthase family protein 1Chr20:34140611–34141832 (+)2.869e-11
Glyma.20G217700 hypothetical protein AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein 1Chr20:45347424–45357977 (-)4.607e-11
Glyma.20G235300 hypothetical protein AT1G09060:AT1G09060:JmjC domain protein JMJ24 1Chr20:46790436–46798140 (-)5.05e-11
Glyma.20G235400 hypothetical protein AT4G34910:AT4G34910:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr20:46801199–46803834 (-)5.05e-11