Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30716

Metabolite ID
P30716
Deionized mass
432.2103 Da
Average m/z
433.2187
Average RT
16.1121
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)4.445e-14
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.795e-12
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)7.562e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.287e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.107e-11
Glyma.14G171400 hypothetical protein NA 2Chr14:42398866–42404627 (+)9.687e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.671e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.572e-13
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)4.683e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.795e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)3.653e-11
Glyma.19G118900 hypothetical protein NA 2Chr19:37651114–37657346 (+)7.626e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.39e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.39e-13
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)3.628e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)1.153e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.79e-12
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)1.67e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.084e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.248e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.248e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.248e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)7.562e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.05e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)2.405e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.669e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.287e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.287e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.287e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.287e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)8.709e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)8.709e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.931e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.855e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.496e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.451e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)8.451e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)8.451e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.603e-11
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)1.069e-12
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)2.961e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)7.501e-12
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)9.687e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.317e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.112e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)8.979e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.857e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.778e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.99e-13
Glyma.18G179200 hypothetical protein NA 1Chr18:43222934–43228759 (-)5.666e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)9.112e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.34e-11