Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P30672

Metabolite ID
P30672
Deionized mass
262.0927 Da
Average m/z
263.1002
Average RT
16.0986
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.08e-13
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)5.953e-12
Glyma.03G001400 hypothetical protein AT2G38610:AT2G38610:RNA-binding KH domain-containing protein 2Chr03:160599–165525 (+)9.428e-14
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)9.467e-13
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)2.532e-11
Glyma.08G122500 hypothetical protein NA 2Chr08:9441329–9445315 (-)5.255e-12
Glyma.15G140700 hypothetical protein NA 2Chr15:11520847–11522863 (-)5.379e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.08e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.869e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.31e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.31e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.598e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.16e-15
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)9.468e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.716e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.319e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.923e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.386e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)2.005e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.505e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.532e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)5.892e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.532e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)2.578e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)2.578e-13
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)5.212e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)8.709e-13
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.202e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.757e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.999e-14
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)3.102e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.462e-13
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)6.162e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)6.162e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.329e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.664e-12
Glyma.15G139000 hypothetical protein NA 1Chr15:11314329–11317181 (-)2.357e-11
Glyma.15G139900 hypothetical protein AT3G06610:AT3G06610:DNA-binding enhancer protein-like protein 1Chr15:11427754–11431219 (+)7.193e-11
Glyma.15G140200 hypothetical protein AT5G49460:ACLB-2:ATP citrate lyase subunit B 2 1Chr15:11461119–11467932 (-)7.193e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)4.771e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)3.699e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.945e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.218e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.339e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.175e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.167e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.289e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.289e-11
Glyma.19G005800 Polyribonucleotide nucleotidyltransferase 2, mitochondrial AT5G14580:AT5G14580:polyribonucleotide nucleotidyltransferase 1Chr19:522587–531382 (-)4.287e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.824e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.824e-11
Glyma.19G188200 hypothetical protein NA 1Chr19:44647446–44649620 (-)5.145e-11