Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29923

Metabolite ID
P29923
Deionized mass
1093.5546 Da
Average m/z
1094.5546
Average RT
15.9041
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
96
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

96 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 9Chr03:2202325–2234931 (+)2.211e-13
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.676e-12
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)6.595e-11
Glyma.03G246500 hypothetical protein AT5G49570:PNG1:peptide-N-glycanase 1 2Chr03:44341465–44350438 (-)3.612e-13
Glyma.04G193700 hypothetical protein AT3G48500:PDE312:Nucleic acid-binding, OB-fold-like protein 2Chr04:46528402–46536243 (+)1.71e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)2.564e-12
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)1.629e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)6.925e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.868e-14
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)2.034e-13
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)3.223e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.241e-13
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)1.231e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)4.119e-14
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)1.162e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)5.021e-13
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)2.836e-12
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)2.026e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)2.026e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)2.026e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)2.026e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)2.026e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)2.026e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)2.026e-11
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)6.595e-11
Glyma.03G246600 hypothetical protein NA 1Chr03:44355048–44357092 (+)3.612e-13
Glyma.04G078100 hypothetical protein NA 1Chr04:6531822–6539901 (+)9.965e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.905e-15
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.361e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.407e-14
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.113e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.116e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.116e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)5.677e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.98e-14
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)4.813e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.329e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.372e-12
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)7.556e-11
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 1Chr08:9054060–9063297 (+)5.614e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)2.564e-12
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 1Chr08:9169843–9172229 (-)1.285e-12
Glyma.08G118900 hypothetical protein NA 1Chr08:9180535–9184036 (+)1.471e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)3.104e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.117e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.094e-19
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.955e-18
Glyma.09G091700 hypothetical protein AT2G12550:NUB1:ubiquitin-associated (UBA)/TS-N domain-containing protein 1Chr09:12359874–12367032 (-)6.729e-11
Glyma.09G177400 hypothetical protein NA 1Chr09:40183616–40184826 (-)5.958e-13
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)7.29e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)6.609e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.894e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.894e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.454e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.454e-14
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.12e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)9.178e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)1.02e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.925e-12
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 1Chr14:1009519–1014238 (+)2.92e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.16e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)2.002e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.323e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)7.082e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)9.435e-14
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)3.197e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)3.196e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)3.197e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.395e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.646e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.395e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.395e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.567e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.275e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.964e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)6.994e-13
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)3.626e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)2.579e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)6.803e-12
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)1.334e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.415e-13
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)6.567e-13
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)5.378e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.014e-11
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)7.34e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)6.703e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)1.445e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)9.87e-13
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.543e-13
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)4.06e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.437e-18
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.437e-18
Glyma.19G128100 hypothetical protein NA 1Chr19:38728037–38732422 (+)2.266e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)5.804e-14
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.057e-11
Glyma.20G114400 hypothetical protein AT1G68585:AT1G68585:uncharacterized protein 1Chr20:35614355–35616709 (-)2.35e-11