Overview Annotation GWAS Evidence Associated genes

P29919

Metabolite ID
P29919
Deionized mass
220.1810 Da
Average m/z
441.3700
Average RT
15.9032
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
149
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

149 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)8.269e-15
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)2.097e-12
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 3Chr03:2202325–2234931 (+)3.487e-11
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)1.099e-13
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)2.155e-18
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)4.344e-11
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)8.915e-11
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)1.173e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)2.806e-11
Glyma.03G246500 hypothetical protein AT5G49570:PNG1:peptide-N-glycanase 1 2Chr03:44341465–44350438 (-)4.926e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)4.827e-15
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 2Chr08:9054060–9063297 (+)6.841e-13
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)1.447e-14
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)3.782e-16
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 2Chr08:9169843–9172229 (-)4.048e-14
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)2.596e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.494e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)5.607e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.276e-13
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)1.173e-13
Glyma.16G139000 hypothetical protein NA 2Chr16:29623540–29631451 (+)3.83e-12
Glyma.16G161500 hypothetical protein NA 2Chr16:32076715–32092322 (-)1.903e-13
Glyma.16G178800 hypothetical protein NA 2Chr16:33950003–33953968 (-)7.687e-13
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 2Chr18:51943730–51947645 (+)4.005e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)2.304e-13
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)3.362e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)8.285e-13
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)6.173e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)2.618e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.588e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.588e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)6.309e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)7.678e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.541e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.719e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.204e-15
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)8.687e-13
Glyma.03G035800 hypothetical protein NA 1Chr03:4317466–4321009 (+)2.232e-11
Glyma.03G246600 hypothetical protein NA 1Chr03:44355048–44357092 (+)4.926e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)8.412e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)3.317e-12
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)1.478e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.355e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.784e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.709e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.939e-13
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)7.691e-12
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)2.097e-12
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)6.604e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)4.628e-13
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)7.849e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)7.658e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.684e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)5.055e-12
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)7.87e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)7.869e-11
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)4.719e-11
Glyma.07G129600 hypothetical protein AT4G29670:ACHT2:atypical CYS HIS rich thioredoxin 2 1Chr07:15404178–15410144 (-)5.086e-12
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)7.638e-12
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)1.447e-14
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)1.097e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)6e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.654e-12
Glyma.08G147200 hypothetical protein AT3G18710:PUB29:plant U-box 29__AT5G64660:CMPG2:CYS, MET, PRO, and GLY protein 2 1Chr08:11225587–11227445 (+)2.26e-11
Glyma.08G147300 hypothetical protein NA 1Chr08:11238871–11242682 (+)1.284e-11
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)3.932e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)2.143e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)2.143e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)9.129e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.858e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.15e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.321e-15
Glyma.09G177400 hypothetical protein NA 1Chr09:40183616–40184826 (-)2.87e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)1.92e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)3.102e-12
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.945e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)3.929e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.063e-12
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)1.459e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)5.564e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)7.611e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)7.611e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)7.611e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)4.53e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.875e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.875e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.956e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.956e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.622e-11
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 1Chr14:1009519–1014238 (+)1.929e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)3.566e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)6.707e-15
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.675e-19
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)2.832e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)2.832e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)7.112e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)5.607e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.892e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.548e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.892e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.892e-15
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.306e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.652e-15
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)9.21e-12
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)9.155e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)5.846e-13
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)4.306e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)4.344e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)4.344e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)4.344e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)4.344e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)4.503e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.76e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)8.915e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)8.915e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.489e-14
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.079e-13
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)2.093e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)1.233e-13
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.41e-16
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)2.539e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)5.515e-11
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)1.368e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.456e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.456e-11
Glyma.16G173000 hypothetical protein NA 1Chr16:33365497–33367017 (+)4.477e-11
Glyma.16G178700 hypothetical protein AT5G52660:AT5G52660:Homeodomain-like superfamily protein 1Chr16:33941617–33948775 (+)1.393e-12
Glyma.16G178900 hypothetical protein AT4G25720:QC:glutaminyl cyclase 1Chr16:33954446–33960344 (+)1.393e-12
Glyma.16G179100 BCH2 beta-carotene hydroxylase BCH2 AT4G25700:BETA-OHASE 1:beta-hydroxylase 1__AT5G52570:BETA-OHASE 2:beta-carotene hydroxylase 2 1Chr16:33969618–33972333 (-)1.393e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.125e-15
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.763e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.351e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.351e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)1.194e-11
Glyma.17G137100 hypothetical protein AT4G22860:AT4G22860:Cell cycle regulated microtubule associated protein 1Chr17:11065492–11072635 (+)9.961e-13
Glyma.18G200500 hypothetical protein AT3G51860:CAX3:cation exchanger 3 1Chr18:48016361–48020799 (-)6.641e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)6.423e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.571e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)2.069e-13
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.81e-13
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)4.202e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.235e-19
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.235e-19
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)4.887e-14
Glyma.19G128100 hypothetical protein NA 1Chr19:38728037–38732422 (+)1.32e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.235e-14
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)4.281e-13
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)8.55e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.489e-13