Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29737

Metabolite ID
P29737
Deionized mass
407.2115 Da
Average m/z
408.2198
Average RT
15.8553
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
68
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

68 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)4.107e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.685e-11
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)6.535e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.128e-12
Glyma.06G168700 hypothetical protein AT5G63520:AT5G63520:F-box/LRR protein 2Chr06:14104416–14111842 (+)3.047e-11
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)3.502e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.265e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)3.44e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.786e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.685e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.627e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.087e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.197e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.32e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)3.935e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)3.234e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)3.234e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.335e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.714e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.498e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.177e-15
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)2.304e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.648e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)4.847e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.265e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.265e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)3.502e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.265e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)9.271e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)9.271e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.42e-11
Glyma.09G209800 hypothetical protein NA 1Chr09:43411309–43411773 (+)4.934e-11
Glyma.09G210000 hypothetical protein AT5G45620:AT5G45620:Proteasome component (PCI) domain protein 1Chr09:43422744–43428344 (-)4.934e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)1.583e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.882e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.882e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.882e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.882e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.213e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.529e-15
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)8.196e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.931e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.931e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)7.35e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)7.35e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.954e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.954e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.44e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)3.542e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.318e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.318e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)8.318e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)8.318e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)6.535e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)6.535e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.972e-13
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)5.023e-11
Glyma.16G138800 hypothetical protein NA 1Chr16:29609432–29615000 (+)3.473e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.421e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)6.968e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.128e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.067e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.067e-14
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)2.656e-11
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)1.933e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.372e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)9.905e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.66e-13