Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P29714

Metabolite ID
P29714
Deionized mass
567.2128 Da
Average m/z
568.2235
Average RT
15.8505
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
126
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

126 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.13e-12
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)1.21e-11
Glyma.13G224800 hypothetical protein NA 3Chr13:33748627–33756494 (-)1.801e-12
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)1.205e-15
Glyma.08G147300 hypothetical protein NA 2Chr08:11238871–11242682 (+)8.127e-13
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 2Chr15:48661607–48665946 (-)4.142e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)6.779e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)9.025e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)4.547e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.13e-12
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)1.006e-13
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)4.653e-13
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)1.21e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)1.077e-15
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)7.404e-14
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)2.455e-16
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)3.239e-19
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.349e-18
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)1.959e-17
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)1.959e-17
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)1.959e-17
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)1.959e-17
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)1.959e-17
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)1.959e-17
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)1.959e-17
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)1.205e-15
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)8.401e-14
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)7.145e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)9.341e-14
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)7.166e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.12e-12
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)9.095e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.296e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)6.43e-12
Glyma.04G192000 hypothetical protein AT3G48430:REF6:relative of early flowering 6 1Chr04:46279239–46297477 (-)4.249e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.518e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.076e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.076e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.076e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.149e-19
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.089e-25
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.577e-17
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.924e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.924e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.924e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.022e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.022e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)6.772e-15
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)9.633e-13
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)2.227e-13
Glyma.06G145300 hypothetical protein AT5G05340:PRX52:Peroxidase superfamily protein 1Chr06:11849535–11851671 (+)8.298e-11
Glyma.06G301000 hypothetical protein NA 1Chr06:49001317–49005605 (+)9.742e-12
Glyma.06G301100 hypothetical protein AT2G16030:AT2G16030:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr06:49013527–49014231 (+)5.904e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)7.491e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.23e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)1.489e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)1.489e-11
Glyma.08G113900 hypothetical protein AT3G13560:AT3G13560:O-Glycosyl hydrolases family 17 protein 1Chr08:8730526–8734718 (-)2.184e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)3.894e-11
Glyma.08G117700 hypothetical protein NA 1Chr08:9080318–9084658 (-)6.145e-12
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)3.894e-11
Glyma.08G147200 hypothetical protein AT3G18710:PUB29:plant U-box 29__AT5G64660:CMPG2:CYS, MET, PRO, and GLY protein 2 1Chr08:11225587–11227445 (+)2.231e-13
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)3.177e-12
Glyma.08G147500 hypothetical protein AT3G18680:AT3G18680:Amino acid kinase family protein 1Chr08:11253074–11256505 (+)5.087e-11
Glyma.08G148700 hypothetical protein NA 1Chr08:11384601–11387727 (-)4.742e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)8.257e-13
Glyma.09G056900 hypothetical protein NA 1Chr09:5128829–5132737 (+)6.725e-11
Glyma.09G057000 hypothetical protein NA 1Chr09:5140625–5145658 (+)6.725e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)1.633e-13
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.871e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)7.224e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.427e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.027e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.13e-15
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)7.888e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)1.24e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)8.422e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)8.875e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)8.875e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.995e-13
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)5.395e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)7.198e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.164e-15
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.164e-15
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.164e-15
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)5.582e-17
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)5.425e-13
Glyma.13G224300 hypothetical protein NA 1Chr13:33703380–33715996 (-)1.801e-12
Glyma.13G224500 hypothetical protein AT1G29750:RKF1:receptor-like kinase in flowers 1 1Chr13:33725180–33735368 (+)3.12e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)5.457e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.517e-14
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)9.159e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)9.159e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.45e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.852e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.45e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.45e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.616e-14
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)2.702e-11
Glyma.15G257500 hypothetical protein NA 1Chr15:48713244–48717192 (+)5.235e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)6.779e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.327e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.639e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)4.371e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)6.928e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)1.016e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.775e-13
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)6.009e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.169e-13
Glyma.16G198600 hypothetical protein AT5G52060:BAG1:BCL-2-associated athano 1 1Chr16:35958085–35960833 (+)8.239e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.726e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)5.652e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)5.652e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)7.864e-11
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)2.054e-12
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)2.054e-12
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)2.054e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.307e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)9.025e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)3.561e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)3.231e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)4.17e-13
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)1.994e-11
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)7.362e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)7.919e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)3.613e-11